Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0865 ATGTCTTGTCCACCGACTAGTACAACTCATGGGCTGGGCCAGGCCCAAAATGAGTGGGTCCAGCAGCAAGGAAGTGGTTATTTTCCTATGATGATGTCAGGTTTTGTTCCTGTCTCTTCTAGTTCTAATTCTCCTCGTATGTATTCTTCTAGTTCATCATCATCATGGGTTGGACACAAAAGAGGGCGTGAAGAAAATGATTCAGTTGGTGTTGGTGTTGGTGTTGGTGCTTCTTCTTCTCATCAAGATATGAATACAATTCATAGAAATATTGCTGATTTTAGATTACCTACTTCACAGGGAAACTCATCATCATCAGCAACAGAAGCAACTACACCTACAAGTACAAGCACTGCAACACAATCGGCGGCAACAAATGAAGAAGAAACCGGAGAGAAAAGACGAAGATACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCAGCAGAAATTCGCGATCCACACAAAGCAGCAAGAGTATGGCTTGGAACATTCGACACAGCAGAAGCGGCAGCAAGAGCTTACGATGAAGCTGCATTAAGATTCAGAGGAAACAGAGCAAAACTCAACTTCCCTGAAAATGTTACATCAACAAGACCAAATTTTCCGGCAAATACTTCAACCGTATCTAATTTTCCGACAACCCTTTATTCTCCAGCACCACCACAACAGCCACAGCAAATGCAGATACAAACACAACAACCTTTTGTTCAATTTCAAGGAACTTCTGATTTGTTAAGAGACTATTATCAATATTCACAGATTCTAAAAGGTTCAGGTGATTTTCAAGGACTTGAGCAATGGTTTTATGAATCACAAATGCCATCGATACATTCGTCTTCTTCATTGTTATCGCCTATGCCATCGCTTTCTTTGTCTTCTTCATCATCTCCAACTCCATTTTCACCTTCAAGTCAACTAGCCTCTGTTTCACTTCCCCTGTTTCCTGGTCAGCAAATGGAGTTTTTCCGGCCACCGGAAGATCAATCTCACAGCGGAGGATATGGTGGTGGCCCTGGTGGGTCCCATTTTCCACCTTCATGGTCAGATACTGGTGGCTATCATCATCCTCCTCCTCCTCCACCACCTTCTTCTGGTTGA 1104 0.4321 MSCPPTSTTHGLGQAQNEWVQQQGSGYFPMMMSGFVPVSSSSNSPRMYSSSSSSSWVGHKRGREENDSVGVGVGVGASSSHQDMNTIHRNIADFRLPTSQGNSSSSATEATTPTSTSTATQSAATNEEETGEKRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTSTRPNFPANTSTVSNFPTTLYSPAPPQQPQQMQIQTQQPFVQFQGTSDLLRDYYQYSQILKGSGDFQGLEQWFYESQMPSIHSSSSLLSPMPSLSLSSSSSPTPFSPSSQLASVSLPLFPGQQMEFFRPPEDQSHSGGYGGGPGGSHFPPSWSDTGGYHHPPPPPPPSSG* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0865 367 MobiDBLite consensus disorder prediction 97 126 - -
Tpr1g0865 367 SUPERFAMILY DNA-binding domain 136 194 IPR016177 GO:0003677
Tpr1g0865 367 ProSiteProfiles AP2/ERF domain profile. 136 193 IPR001471 GO:0003700|GO:0006355
Tpr1g0865 367 Gene3D AP2/ERF domain 135 195 IPR036955 GO:0003700|GO:0006355
Tpr1g0865 367 SMART rav1_2 136 199 IPR001471 GO:0003700|GO:0006355
Tpr1g0865 367 MobiDBLite consensus disorder prediction 319 367 - -
Tpr1g0865 367 MobiDBLite consensus disorder prediction 97 142 - -
Tpr1g0865 367 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 34 324 - -
Tpr1g0865 367 MobiDBLite consensus disorder prediction 353 367 - -
Tpr1g0865 367 CDD AP2 144 195 IPR001471 GO:0003700|GO:0006355
Tpr1g0865 367 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Tpr1g0865 367 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Tpr1g0865 367 PANTHER DNA-BINDING DOMAIN 34 324 IPR044808 GO:0003700|GO:0009873
Tpr1g0865 367 Pfam AP2 domain 136 185 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0865 Tpr-Chr1 7364169 7367092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0865 121 196 AP2-EREBP Transcription Factor Family AT5G61890 73.684 2.31e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g0865 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0865 - - lja:Lj5g3v1937400.1 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0865 1 7364169 7367092 Tpr1g0865 1 7364169 7367092 ECH
Tpr2g0817 2 9991827 9994552 Tpr1g0865 1 7364169 7367092 PCT