Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0862 ATGTCTCACAGGAAGTTCGAGCATCCAAGACATGGTTCATTGGGATTCCTCCCAAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCTTTCCCTAAGGATGACCCAACCAAGCCACCCAAGCTTACTGCTTTCTTGGGTTACAAGGCTGGTATGACCCATGTTGTCAGAGAAGTCGAGAAACCAGGATCTAAGCTTCACAAGAAGGAGACTTGTGAGCCTGTCACAATTATTGAGACCCCTCCTATGGTTGTTGTCGGTGTTGTGGGTTATGTTAAAACTCCCCGTGGTCTTCGTACCTTGAACACTGTATGGACTCAGCATTTGAGTGAGGAAATTAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCAGCAAGTACTCCAAGCAGTATGAAAGTGATGAAGGAAAGAAAAACATTCAGACACAGCTTGATAAACTGAAGAAGTATTCAACTGTTATCCGTGTCTTGGCTCACACTCAGATCAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCCCATATCATGGAAATTCAGGTTAATGGCGGTACAATTGCCCAGAAGGTGGACTTTGCATACAATTTCTTTGAGAAACAGGTTCCTATTGATGCTGTCTTCCAGAAGGATGAAATGATTGACATCATTGGAGTGACAAAAGGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTTACTCGTCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCTGCTAGAGTTTCATTCACTGTTGCTAGGGCTGGTCAGAACGGTTACCATCACAGAACTGAGCTGAACAAGAAAATTTACAAGCTCGGCAAAACTGGAGAAGAGACCCATGATGCCCAGACTGAGTTCGATAGGACTGAGAAAGACATCACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGTGAAGGAGGATTATCTGATGATCAAGGGAGGTGTTGTTGGTCCCAAGAAGAGGGTTGTGACATTGCGTCAGTCCCTTCTCAAGCAGACTTCCCGTCTTGCATTGGAAGTTATCGTACCCAAGTTTATTGATACCTCTTCCAAGTTTGGCCATGGTCGTTTCCAGACAACACAAGAGAAGCAAAAGTACTATGGACGCCTCAAAGCTTAA 1170 0.4538 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHVVREVEKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYKNWCKSKKKAFSKYSKQYESDEGKKNIQTQLDKLKKYSTVIRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYNFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKTGEETHDAQTEFDRTEKDITPMGGFPHYGVVKEDYLMIKGGVVGPKKRVVTLRQSLLKQTSRLALEVIVPKFIDTSSKFGHGRFQTTQEKQKYYGRLKA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0862 389 PANTHER 60S RIBOSOMAL PROTEIN L3-1 1 389 - -
Tpr1g0862 389 MobiDBLite consensus disorder prediction 1 36 - -
Tpr1g0862 389 Gene3D - 83 207 - -
Tpr1g0862 389 Gene3D Translation factors 44 385 - -
Tpr1g0862 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Tpr1g0862 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Tpr1g0862 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Tpr1g0862 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Tpr1g0862 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0862 Tpr-Chr1 7338256 7341557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0862 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 85.530 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0862 K02925 - gmx:100819132 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0862 1 7338256 7341557 Tpr1g0862 1 7338256 7341557 ECH