Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0851 ATGTCCTTCCGAAGTATAATGCGTGATGTGAGGGATGGATTTGGAAGTTTATCAAGGCGGAGTTTTGAGGTGAGGCTTCCTGGCCATCAAAGGGGAAAGTCACGTAGTTCGGTTCATGAATTGCATGATCAGCCTCAAGTTATACAGAACAGCCGGTGGGCTAGCCTTCCACCCGAGCTTCTACGTGATGTGATTAAGAGATTGGAAACTAATGAGAGTACTTGGCCTAATCGTAAGCATGTGGTTGCTTGTGCTGCTGTGTGCAAGTCATGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCTTGAATACTGTGGGAAGATTACTTTCCCCATTTCCTTGAAGCAGCCTGGCTATAGGGATGGACCTATCCAATGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTTGCCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTTTGTCTGCAAAACGTACCAGAAGAACGACTTGCACGGAGTATGTTATATCAATGGATGCAGATAACATATCAAGATCTAGTAGCACTTACATTGGAAAGCTTAGATCTAATTTTCTCGGAACCAAGTTCATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGGCTCCACCTGGACGCAGCCGTAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATCGCCCAGGTCACCTATGAGTTGAATGTTCTCGGTACTAGAGGCCCGCGAAGGATGAATTGCACTATGTACTCGGTCCCTGCCTCTTCCCTTGAGCCTGGTGGCATTGTCCCAGGCCAGCCAGAGCTCATTCAGCGTTCACTTGAGGATTCTTTCCGTAGTTTATCCTTTGCAAGATCAATTGATAATTCTACCGAGTTTAGCAGCTGTAGGTTCTCAGATATAATGGGTGCTAGCAATGAAGATGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAGTCTCCGAGATGGCACGAACAGCTGCAGTGTTGGTGCCTTAACTTTAGAGGAAGAGTGACTGTCGCGTCCGTCAAGAATTTTCAGCTGATTGCTGCAACACAGCCTGCACCTGGTGCTCCTCATGCAACAGCAGGACCTGCGCCGTCACAGCCGGGACAGTCTGACCATGACAAAATTATTCTTCAGTTTGGTAAGGTCGGCAAGGATATGTTTACCATGGACTACCGATACCCTCTCTCGGCATTTCAGGCTTTCGCGATATGTTTGACTAGCTTTGACACTAAATTGGCATGTGAATAG 1293 0.4594 MSFRSIMRDVRDGFGSLSRRSFEVRLPGHQRGKSRSSVHELHDQPQVIQNSRWASLPPELLRDVIKRLETNESTWPNRKHVVACAAVCKSWREMCKEIVSSLEYCGKITFPISLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAPPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSVPASSLEPGGIVPGQPELIQRSLEDSFRSLSFARSIDNSTEFSSCRFSDIMGASNEDEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAPGAPHATAGPAPSQPGQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0851 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Tpr1g0851 430 Pfam Tub family 114 425 IPR000007 -
Tpr1g0851 430 Gene3D Tubby Protein; Chain A 113 424 IPR025659 -
Tpr1g0851 430 Pfam F-box domain 53 99 IPR001810 GO:0005515
Tpr1g0851 430 SUPERFAMILY Tubby C-terminal domain-like 103 430 IPR025659 -
Tpr1g0851 430 PANTHER TUBBY-RELATED 1 430 - -
Tpr1g0851 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Tpr1g0851 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Tpr1g0851 430 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Tpr1g0851 430 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Tpr1g0851 430 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Tpr1g0851 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Tpr1g0851 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Tpr1g0851 430 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 430 - -
Tpr1g0851 430 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Tpr1g0851 430 Gene3D - 47 102 - -
Tpr1g0851 430 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0851 Tpr-Chr1 7233882 7237866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0851 1 430 TUB Transcription Factor Family AT1G76900 69.890 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tpr1g0851 Tub 1.4e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0851 K19600 - gmx:100817532 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0851 1 7233882 7237866 Tpr1g0851 1 7233882 7237866 ECH
Tpr2g0791 2 9618330 9622384 Tpr1g0851 1 7233882 7237866 PCT