Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0850 ATGGATATTTCTACCGGTGAGGATATTGTTCCGTCCGTGGTGGTGCAAAACGGCGCTAACGGTGGTCATGAAGAGAAAGAAAGTGAGATTATTGAGGAAGATGATAAGATTAATATGAATGGTGGTGGAGGAAATAGGTGGCCCCGCCAAGAAACATTGGCACTCTTGAAGATAAGATCAGATATGGATGGTGTTTTTCGTGATTCAAGTCTTAAGGGTCCCCTATGGGAAGAAGTTTCAAGAAAACTAGGTGAACTTGGTTATCACCGAAGCTCAAAGAAATGCAAAGAGAAATTTGAGAATGTATACAAATATCACAAAAGAACCAAAGAAGGTAGAAGTGGAAAATCAGAAGGAAAAACTTATAGATTTTTTGATCAATTACAAGCACTTGAAAAACAATTCACACTCTCTTCTTACTCTCCAAAACCACAATCAAATAATAATCACACATCCTCATTACCAACAACAAAGCCTAATGAAACCATAAATCCAATATCACATGTAACCAATACTACTATTCCATCCACAAACCCTACTGCACTCGTTTTTCCTTCACCGCCATCAGCCAATACCACAACCAACCCTAACCACAACAACAATGTTCCATATTCTTTACCAAACATGAATAACCTATTCTCAAACACACCTACCTCAACTTCGTCCTCGACGGCTTCAGATGAAGACTTGGAAGAGAAGTACAGGAAGAAAAGAAAATGGAAGGACTATTTCAGGAGATTGACAAGACAAGTGTTGGCAAAACAAGATGAAATGCAAAAGAAGTTTCTAGAAGCGATAGACAAACGCGAAAAAGAACACTTGGCTCAACAAGACGCTTTGAGAATTCAAGAAATAAATCGAATCAATAAAGAACATGAACTTCTTGTCCAAGAAAGATCATCAGCCGCTCAAAAAAATGCCGCCATTATTGCCTTTCTCCAAAAATTGTCTGGACAACCACCACCGCCACCACCACCAACAGTGCCAGAGATGTCTCCGGCTCCGATATCACAAGTACAAACACAACAACTTGTGATACCAAACAACAACATTGTTGAAATTAAGAACATGAATAATGGTCACAAAAGTGATTGTGGTGTTGCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTCCATGCACTTATAAGGATAAGAACAAGTCTTGAACCAAAATATCAAGAAAATGGACCAAAAGCACCATTGTGGGAAGATATATCAGCTGGAATGAAGAAACTTGGTTACAATAGGAATGCAAAAAGATGCAAAGAGAAATGGGAGAATATCAACAAGTACTACAAGAAGATGAAGGAAAGTAACAAACAAAGACGTGATGATAGTAAGACATGTCCTTATTTTGATGAACTTGAAGCTCTTTACAAAGAAAAGAACAAATTACAGAACCCTTTTGGTTCTAATTCATTTCATAGTATTAAGTCAAGTGAGATGATGGAGCCATTGATGGTGCAACCAGAACAACAATGGAGACCTCCAACTCAAGATGAAGAAGCTAATGTGGTGAAGAAGAATCTTAATGAAGCAAAAGAAGATGAAGATGATGGTGATGTTGATGATGAGGATGAAAATATGGATGAATATGAAGATGGAGATAGCATGGAAGAAGATGAAGGAGGTGTTAGTAGCCGTTATGAAGTTGTCACAACAAATAAACTTTCTTCAATGGACACAGTTGGATGA 1695 0.3805 MDISTGEDIVPSVVVQNGANGGHEEKESEIIEEDDKINMNGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLGELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALEKQFTLSSYSPKPQSNNNHTSSLPTTKPNETINPISHVTNTTIPSTNPTALVFPSPPSANTTTNPNHNNNVPYSLPNMNNLFSNTPTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQDEMQKKFLEAIDKREKEHLAQQDALRIQEINRINKEHELLVQERSSAAQKNAAIIAFLQKLSGQPPPPPPPTVPEMSPAPISQVQTQQLVIPNNNIVEIKNMNNGHKSDCGVASPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAGMKKLGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFDELEALYKEKNKLQNPFGSNSFHSIKSSEMMEPLMVQPEQQWRPPTQDEEANVVKKNLNEAKEDEDDGDVDDEDENMDEYEDGDSMEEDEGGVSSRYEVVTTNKLSSMDTVG* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0850 564 SMART sant 43 105 IPR001005 -
Tpr1g0850 564 SMART sant 369 431 IPR001005 -
Tpr1g0850 564 PANTHER - 17 558 - -
Tpr1g0850 564 MobiDBLite consensus disorder prediction 488 564 - -
Tpr1g0850 564 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 17 558 - -
Tpr1g0850 564 CDD GT1 45 110 - -
Tpr1g0850 564 MobiDBLite consensus disorder prediction 548 564 - -
Tpr1g0850 564 MobiDBLite consensus disorder prediction 1 45 - -
Tpr1g0850 564 MobiDBLite consensus disorder prediction 501 515 - -
Tpr1g0850 564 Gene3D - 373 434 - -
Tpr1g0850 564 Gene3D - 47 108 - -
Tpr1g0850 564 CDD GT1 371 436 - -
Tpr1g0850 564 ProSiteProfiles Myb-like domain profile. 371 429 IPR001005 -
Tpr1g0850 564 MobiDBLite consensus disorder prediction 22 36 - -
Tpr1g0850 564 MobiDBLite consensus disorder prediction 516 540 - -
Tpr1g0850 564 MobiDBLite consensus disorder prediction 138 162 - -
Tpr1g0850 564 Pfam Myb/SANT-like DNA-binding domain 371 458 IPR044822 -
Tpr1g0850 564 Pfam Myb/SANT-like DNA-binding domain 45 131 IPR044822 -
Tpr1g0850 564 ProSiteProfiles Myb-like domain profile. 45 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0850 Tpr-Chr1 7205711 7209113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0850 41 493 Trihelix Transcription Factor Family AT1G76890 50.304 1.76e-143 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr1g0850 Myb_DNA-bind_4 6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0850 - - gsj:114370603 648.662