Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0849 ATGCTAGGAGACTCAGCTGTTTTGAGTGGCGGTGGAGATGCAGCAGCAACACCCAACATGACGGCCGAAGCGGCGGTTGCTGGTGGTGGAGTTGGATCAAATTCAGAGAGTGATGTTGAAAGAAGTAGAATTGATGAAGGTGAACGTAGCTTCAGCGGTAACCGGTGGCCGCGACAAGAAACTATGGCCCTTTTAAGGATACGATCGGATATGGACACAACCTTTCGAGATGCAAGTGTTAAAGGTCCTTTGTGGGATGAAGTTTCAAGGAAGCTAGCAGAACTTGGGTACCACAGAAGTGCAAAGAAATGCAAAGAGAAATTTGAAAATGTTTATAAGTATCACAAGAGAACAAAAGATGGTCGCGGTGGAAAATCAGATGGTAAAACTTATCGATTTTTCGATCAATTAGAAGCTCTTGATCATTTTCATAACCCTCCTTCAAATCATCCTCAACCTCAAAATCAACCACAAATTTCTGCACCAACAATCGCACCGCCACAAGTTGTTACAACAACTGCAACAATTTCGATCCCAATTGCAGAACCAGCAACAATTCCAATGTCATTGCGCCCGGTGGTTAACACAACTCTTAGTATCCCCAATGCAAGTGTTCCATTAATTCCCATGCCTCAGAACAATATTGTAACTACTCAATCAATTATGAATATGAACCAAACAATCCCTTCTAATCCTTCAACAAATTTCCAACCATCAACTATAAATCCTGCTACCATCGCCTCTCTTCCGTCTTTCCCTAACATTTCAACAGATCTATTTTCAAATTCCATGGCGAGTTCATACTCGACTTCTTCTGATGACACAATGGAAGAAGGATCCAGAAAGAGGAAGAGAAAATGGACTAACTTTTTCGAGAGACTGATGAAGGAAGTGATTGAGAAACAAGAGGATTTGCATAAGAGATTCTTGGAAGCTATTGAAAAACGCGAACAAGATCGAATGGCTAGAGAAGAAGCTTGGAGAGAACAAGAGATGCAAAGAATCAATAGAGAGAGGGAAATTCTTGCACAAGAAAGATCTGTATCTGCAGCAAAAGATGCTGCAATTATGTCTTTCTTGCAAAAAATTGCTGAACAACAAAATCTTGGACAAGCATTGAATATCATCAACATTGCACAACCACCACCACCACCACAACAACAACCACAAAAACAACGGAGTGCAGCAGCAGCAGCAGCAGCACCAACACCACTACCGCCTGCACCAACACCAATATCAGTGGTACAACAAGTACAAGCCCACCCACCACCGTCTTCTAAACCGGCCCCACCGACAGCCCCGCAGCAGCAACAGCAGTCGGTAACAAATATGGAAATAGTAAAAGTTGATAATAATGGTGAGAATTTCATGGGAGTGAGTCCGTCGAGGTGGCCAAAAGTGGAAGTTCAAGCACTGATAAATCTGAGAACAAGCATGGATAATAAGTACCAAGAGAATGTACCAAAAGGCCCTCTATGGGAGGAAATTTCTTCAGCAATGAAGAACCTTGGTTACAATAGGAATGCAAAAAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAAAGTGAAGGAAAGTAACAAGAAAAGACCAGAAGATTCCAAGACATGTCCTTATTTTCATCAGTTGGATGCTTTGTATAAGGAGAAAGGCAAAGGGGACAATTCCGGTGGCAGCGGTGGTTCGAGCCAGGTGGTGAAGGCGGATAACATGACAGCGCCGTTAATGGTTAGGCCGGAGCAACAATGGCCACCTCAGCAGGAAGAAGATAGGATGAATCGGGACCGTGGAGAGGAAGAAGATGATATGGATGAAGATGATAAAGAAGGAGAAGACGAAAACGAACAAGATATGGATGAAAGTGGCGGCTGCGGTGGAGGTGGTAGTAGTAACTTTGAGGTAGTGGCAGCAAGCAAGCCTACGGTGGATGCATCAGCTTGA 1950 0.4333 MLGDSAVLSGGGDAAATPNMTAEAAVAGGGVGSNSESDVERSRIDEGERSFSGNRWPRQETMALLRIRSDMDTTFRDASVKGPLWDEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRGGKSDGKTYRFFDQLEALDHFHNPPSNHPQPQNQPQISAPTIAPPQVVTTTATISIPIAEPATIPMSLRPVVNTTLSIPNASVPLIPMPQNNIVTTQSIMNMNQTIPSNPSTNFQPSTINPATIASLPSFPNISTDLFSNSMASSYSTSSDDTMEEGSRKRKRKWTNFFERLMKEVIEKQEDLHKRFLEAIEKREQDRMAREEAWREQEMQRINREREILAQERSVSAAKDAAIMSFLQKIAEQQNLGQALNIINIAQPPPPPQQQPQKQRSAAAAAAAPTPLPPAPTPISVVQQVQAHPPPSSKPAPPTAPQQQQQSVTNMEIVKVDNNGENFMGVSPSRWPKVEVQALINLRTSMDNKYQENVPKGPLWEEISSAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKGKGDNSGGSGGSSQVVKADNMTAPLMVRPEQQWPPQQEEDRMNRDRGEEEDDMDEDDKEGEDENEQDMDESGGCGGGGSSNFEVVAASKPTVDASA* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0849 649 CDD GT1 462 527 - -
Tpr1g0849 649 MobiDBLite consensus disorder prediction 38 53 - -
Tpr1g0849 649 MobiDBLite consensus disorder prediction 602 622 - -
Tpr1g0849 649 Gene3D - 56 117 - -
Tpr1g0849 649 Gene3D - 464 525 - -
Tpr1g0849 649 Pfam Myb/SANT-like DNA-binding domain 54 140 IPR044822 -
Tpr1g0849 649 Pfam Myb/SANT-like DNA-binding domain 462 549 IPR044822 -
Tpr1g0849 649 PANTHER - 1 640 - -
Tpr1g0849 649 ProSiteProfiles Myb-like domain profile. 462 520 IPR001005 -
Tpr1g0849 649 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 640 - -
Tpr1g0849 649 CDD GT1 54 119 - -
Tpr1g0849 649 MobiDBLite consensus disorder prediction 415 440 - -
Tpr1g0849 649 SMART sant 52 114 IPR001005 -
Tpr1g0849 649 SMART sant 460 522 IPR001005 -
Tpr1g0849 649 MobiDBLite consensus disorder prediction 26 55 - -
Tpr1g0849 649 MobiDBLite consensus disorder prediction 587 601 - -
Tpr1g0849 649 MobiDBLite consensus disorder prediction 574 649 - -
Tpr1g0849 649 ProSiteProfiles Myb-like domain profile. 48 112 IPR001005 -
Tpr1g0849 649 MobiDBLite consensus disorder prediction 382 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0849 Tpr-Chr1 7186045 7189641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0849 53 591 Trihelix Transcription Factor Family AT1G76890 45.668 1.90e-135 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr1g0849 Myb_DNA-bind_4 3.7e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0849 - - gmx:100811604 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0849 1 7186045 7189641 Tpr1g0849 1 7186045 7189641 ECH
Tpr2g0789 2 9563951 9567702 Tpr1g0849 1 7186045 7189641 PCT