Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0845 ATGGAGAACAATAAACCACCACACAAGGTCGAGAATTCTCCGACGTTGAAGTCTCCGGTCACCGATGAGAATGGAGATGATAATGGTGTGAAAGTAGTTTGTCCAGCGCCACCGCAAGATGATAAAGTTACTGAAGTAGGTTCAAGGGTAAAGGAGGGAGAAGACGAGACTGTAGAATCAGCCGCGGCAAAAAAGAAGAGAAAGAAGAAGGAAAAGGAAAAGGAGAAGAAGGCGGCGGCAGCAGCAGCGGCCGGAAGTGCAGCGGTTATTGAAAGTGAACCAAAGAAAATTGATTCGAAGACGAACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAATTAGTGGCTCGAAGAAAAGAGGCGGAAGAGAGAAAGAAAAGAGAAGAGGAAGAGAAGCTAAGGAAAGAAGAAGAGGAGAGACAAAGGATAAAGGAACTTGAGAGACAGGAAGAAGAGGCTAAACGTATAAAGAAGGAAAAAGAAAAGACAAAACTACTGGAAAAGAAGCGGAGACAAGAAGCGCAACGTTATGAGGCAATGAGAAGGCAGATTATCAATAGCATGGGGGTTGTGAATCTTCCTGTTAGGGAGGATACTGGTGCACCGGCTAAGAAACCTATTTATCGGACAAGGAAAGGGCGATCAACTATTCGAAATCATAATGGCGAAGCTTCTGTCAAGATAGATGAAAGTGGTGAGGCAAAGGAAACTATAATTGATTTAGATTCAGAGGAACCGTCGGTGCAGATGGACGACAATGTTGAACTTCCTGAAGCTGTTGAAGAGGATGTTGAGGATGCATGGGATGATAGGGGTGCATTTGCTGATGAAGAAGTTGTGCATCTGAATGTTGGTGCTATGAATAAAACTGTTTCGAAGCCTGCGGTTGAAGAAATTGAAGACAGAAAGCAGGCCAAAGTTGTGGTTGAGGACAAAAAGATAAATCACAATCCACAACAGTCTGCTGTGTCTTCTAGTCCGAGTGATGGGAACAACCTCCGGTCGCCAATTTGTTGCATCATGGGTCATGTGGACACTGGTAAAACCAAACTTCTGGATTGTATTCGAGGTACCAATGTTCAAGGAGGCGAGGCTGGCGGTATCACCCAGCAGATTGGCGCAACATACTTTCCTGCTGAGAACATACGCGAAAGAACTAAGGAACTGAAAGCTGATGCAACGCTGAAAGTTCCTGGTCTACTAGTTATTGATACCCCAGGCCACGAATCGTTCAATAACTTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACTATAGAGTCACTCAATCTATTAAAAATGAGGAACACAGAATTCATTATTGCATTGAATAAGATTGACAGGCTTTATGGCTGGAAAACATGTCGCAATGCTCCAATTCGTAAAGCAATGATGAAGCAGTCTAAGGATGTTAAAAATGAGTTCAATATGAAGGTCACTCAGATCATTACTCAGTTCAAGGAACAAGGGCTTAATACTGAATTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTACCTACAAGTGCAATAAGTGGTGAAGGAATCCCAGATATGTTATTACTATTGGTTCAGTGGACTCAAAGGACCATGATTGAGAAACTTACATACAGCGAAGAAGTGCAGTGCACCGTTTTGGAAGTCAAGGTCATCGAAGGCCATGGAACTACTATTGATGTCGTTTTAGTTAACGGTGTTCTTCATGAAGGAGATCAAATAGTTGTTTCTGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGATCATATATCCATCACAAAGAAATCAAAGCTGCAATGGGCATCAAGATCACGGCCCAGGGACTTGAACATGCTATTGCCGGCGCTAGTTTATATGTGGTGAAGCCTGATGATGATTTGGAGTATATTAAAAAGGCGGCTTTGGAAGACGTGGAGTCAGTCTTGAGCAGGGTTGACAGGAGTGGCGAGGGGGTTTGTGTCCAGGCATCTACGCTTGGCTCATTGGAAGCATTACTAGAGTTTTTGAAAACTCCGGAAGTCAACATTCCTGTTAATGCTATAAACATAGGTCCTGTACACAAGAAGGATGTGATTAAGGCCGGTGTAATGCTTGAAAAGAAACGAGAGTATTCTACTATATTGGCGTTTGATGTCAAAGTCACACCTGAAGCTAGGGAACTTGCAGATAAATTGGGTGTGAAAATTTTTAGTGCCGATATCATTTATCATTTATTTGATCAATTTAAGGCTTACATGGACAACATTAAGGAGGAGAAAAAGAAAGAATCTGCTGACGAAGTAGTCTTCCCATGCGTTCTGAAGATCATACCAAATTGCGTCTTCAATAAGAAGGATCCGATTATTTTGGGAGTTAATATCGTTGAAGGCACGTTAAAGATTGGGACTCCAATTTGTATTCCTTCCCAAGATTTTATTGATATTGGCCGCATTGCCTCCATTGAGATTAACAAGAAATCGGTTAATCATGCGATGAAAGGGCAGGAAGTAGCCATTAAGATTGTTGGCTGCAATTCTGAGGAAAAGCAGAAAACATTTGGGAGGCATTTTGATATCGATGATGAACTTGTAAGCCATATTTCACGGAGATCTCTCGATGTTCTCAAAACTAATCATCGGGACGATTTGTCTATGGAGGAACGGAAGCTGGTGGCGACATTGAAGAGACTTTTCAAGATACAATGA 2781 0.4204 MENNKPPHKVENSPTLKSPVTDENGDDNGVKVVCPAPPQDDKVTEVGSRVKEGEDETVESAAAKKKRKKKEKEKEKKAAAAAAAGSAAVIESEPKKIDSKTNKKVPKHVREMQELVARRKEAEERKKREEEEKLRKEEEERQRIKELERQEEEAKRIKKEKEKTKLLEKKRRQEAQRYEAMRRQIINSMGVVNLPVREDTGAPAKKPIYRTRKGRSTIRNHNGEASVKIDESGEAKETIIDLDSEEPSVQMDDNVELPEAVEEDVEDAWDDRGAFADEEVVHLNVGAMNKTVSKPAVEEIEDRKQAKVVVEDKKINHNPQQSAVSSSPSDGNNLRSPICCIMGHVDTGKTKLLDCIRGTNVQGGEAGGITQQIGATYFPAENIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIIALNKIDRLYGWKTCRNAPIRKAMMKQSKDVKNEFNMKVTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVQWTQRTMIEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVSGMQGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLEYIKKAALEDVESVLSRVDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVNAINIGPVHKKDVIKAGVMLEKKREYSTILAFDVKVTPEARELADKLGVKIFSADIIYHLFDQFKAYMDNIKEEKKKESADEVVFPCVLKIIPNCVFNKKDPIILGVNIVEGTLKIGTPICIPSQDFIDIGRIASIEINKKSVNHAMKGQEVAIKIVGCNSEEKQKTFGRHFDIDDELVSHISRRSLDVLKTNHRDDLSMEERKLVATLKRLFKIQ* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0845 926 Gene3D - 329 556 IPR027417 -
Tpr1g0845 926 MobiDBLite consensus disorder prediction 93 161 - -
Tpr1g0845 926 Pfam Elongation factor Tu GTP binding domain 338 545 IPR000795 GO:0003924|GO:0005525
Tpr1g0845 926 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 44 926 IPR015760 -
Tpr1g0845 926 CDD IF2_aeIF5B_IV 797 892 - -
Tpr1g0845 926 Gene3D - 678 782 IPR036925 -
Tpr1g0845 926 CDD aeIF5B_II 558 664 - -
Tpr1g0845 926 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 334 550 IPR000795 GO:0003924|GO:0005525
Tpr1g0845 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 625 IPR027417 -
Tpr1g0845 926 MobiDBLite consensus disorder prediction 1 161 - -
Tpr1g0845 926 Coils Coil 58 82 - -
Tpr1g0845 926 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 659 788 IPR036925 -
Tpr1g0845 926 MobiDBLite consensus disorder prediction 8 22 - -
Tpr1g0845 926 Gene3D Translation factors 789 926 - -
Tpr1g0845 926 Pfam Elongation factor Tu domain 2 573 651 IPR004161 GO:0005525
Tpr1g0845 926 TIGRFAM small_GTP: small GTP-binding protein domain 339 463 IPR005225 GO:0005525
Tpr1g0845 926 SUPERFAMILY Translation proteins 793 925 IPR009000 -
Tpr1g0845 926 MobiDBLite consensus disorder prediction 44 66 - -
Tpr1g0845 926 Gene3D Translation factors 557 677 - -
Tpr1g0845 926 CDD IF2_eIF5B 337 547 - -
Tpr1g0845 926 PRINTS GTP-binding elongation factor signature 338 351 IPR000795 GO:0003924|GO:0005525
Tpr1g0845 926 PRINTS GTP-binding elongation factor signature 402 412 IPR000795 GO:0003924|GO:0005525
Tpr1g0845 926 PRINTS GTP-binding elongation factor signature 418 429 IPR000795 GO:0003924|GO:0005525
Tpr1g0845 926 PRINTS GTP-binding elongation factor signature 454 463 IPR000795 GO:0003924|GO:0005525
Tpr1g0845 926 Pfam Translation-initiation factor 2 664 775 IPR023115 -
Tpr1g0845 926 Coils Coil 105 184 - -
Tpr1g0845 926 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5B 44 926 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0845 Tpr-Chr1 7136654 7140759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0845 105 926 Eukaryotic Initiation Factors Gene Family AT1G76810 66.554 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0845 K03243 - gmx:100814875 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0845 1 7136654 7140759 Tpr1g0845 1 7136654 7140759 ECH