Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0844 ATGGGAAAGAAGAAGCCAACAATACGCGACGACGAGAATCCTCCGCAACAAGGTGGCGGTGGGAAATCTAAGAAGAAGGCTCCGATTATCGATGACGATGAATATTCTATCGGAACTGAGCTTTCGGAGGAAACGGCGGCTCCGGTGGTAGTGGATGAGAAACCGGGGAAAAAGAAAGGTAAGAAAGGTAACGCTAAATCTTCTGCTAAAGATAATGGTGATGATTTTGATGTTGTTGATGATGATGTGCCTGAAATTGTTTTTGCTGGGAAGAAAAAGGGGAAATCGAAGAAAAGTGGTGGGGGGAGTGTGTTTAGTGCTGCTGCTGGGTTTGGTTTGCTTGGGGATGAGGAGGATGGTGATGATAAGGATAAGGATGATGATGATGATGAGGAGAAATCGGAGTTAAGAGGTGAAGGAGATGGTGATGAGGATGATGAACCGATTGTTTTTACTGGGAAGAAGAAGAAGTCCTCGAAGGGTTCGAAGAAAGGAGGAGGTAGTTTGTTTAGTGCATTAGATGAGATTGATGATGGGGATGAGGAGAGTAAGGATGAAAAGGCGGAGGATGATGATGATGATGAAGATATAGGATCGATCACTTTCTCGGGGAAGAAGAAGAAATCATCTAAGTCTAAGAAGGCGGCTAGTTTACTGAGTACAGCTATTCCGGATGAGGATAGTGTTTCTGTATCAGAGTCTGCTAAAGGTGGCGATGAAAATGACGAGGATGATATTTCTTTGGCGTTTACTGGTAAAAAGAAGTCTTCTAAAAAGAAGAGTGGTGGTGCTGCTGCCAAAGTGAGTGATGAAAGTGTTGATGCTGTTGAGGCTGAGAAGCCTAGTGTTGGAGAAGTGAGTAATGCTAATGTTGACAATGGTAATATAAGTAAGAGTGAAGAGGTCGTTGGAAATTCTAAAAATAAGAAGAAGAATAAGAAGAAGAGTGGGAGGACAAAAGAAGAGGAGGACGATTTAGATAAGATTCTTGCAGAGCTTGGTGAAGCCCCTCCTACGGCAAAACCTGCTGCTCCTCCGCAGCAGGATGATAAAGTTCAGCCTGCTCCTGAAGTTGGTTCTGCAGCTGGTGCTTCAGTGGAAAAGGAGGGAGAAGAGGATACTGTAGAATCAGCTGCTGCAAAAAAGAAGAAAAAGAAGAAGGAAAAGGAAAAGGAGAAGAAGGCAGCGGCAGCAGCAGCAGCAGCCGGAAGTGCACCGGTTACTGAAACTGTAGAAGAGAAAGCTGAGTTAAGTGAACCAAAGAAAAATGATTCAAAGACCAACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAACAAATCGCTCGAAGACAAGAGGCTGAAGAGAGAAAGAGAAAAGAGGAGGAAGAGAAGCTAAGGAAAGAAGAAGAGGAGCGAAAAAAGCAAGAGGAACTTGAGAGACAGGCAGAAGAGGCTAAACGTATAAAGAAGGAAAAAGAAAAGGAAAGACTAGCGAGAAAGAAGCTAGAAGGTAAATTGTTTACTGCTAAGCAGAAAGAAGAGAACCGACGTAGAGAGATAATGTTGAGGCAGATTATCAATAGCACCGGGGGTTTGACTCTTCCTTCTGGGGACACTGGTGCACCAGCCAAAAAACCCGTTTATCAGACAAAGAAGGGGAAATCAACTAATCGAAATCATAATGGTGCCGGTGCTGTCAAGACAGATGAAAGTGTTGAAAAAAAGGAACCTACTGCTGATTTAGATTTGAAGGAACCGGAAAAGGTTGAAGAAGTGGAGTCGGTGAGAATGGAGGACAAAGTTGAACTTCCTGAAGCTGTAGAAGAGGATGCAGTGGAAGATGATGATGATGAGGTTGACTGGGATGCAAAAGACTTTGATGATGTCAATCTGAATGGTAAGAATGCATTTGCTGATGAAGAAGTTGACTCCGAGCCTGAACAGATTGGCAAAAAAGAGATTAAAAATGTACCTGCTAAAAATGCTGGTGCTAAAAATAAAACTGTTTCGAAGCCTGTGGCTGAAGAAATTGAAGACAGAAAGCAGGCCAAAGTTGTGGTTGAGGACAAAAAGAAAAAACACGATCCACAACAGTCTGCTGTGCCTCCCAAGCCGAGTGAGGGGAACCTCCGGTCGCCAATTTGCTGCATCATGGGTCACGTGGACACTGGAAAAACCAAGCTTCTGGACTGTATTCGAGGTACCAATGTTCAAGAAGGCGAGGCCGGTGGTATCACCCAACAGATTGGCGCAACATACTTTCCTGCTGAGAACATTCGTGAAAGAACTAAGGAACTGAAAGCTGATGCAACACTGAAAGTTCCTGGTCTACTGGTTATTGATACTCCTGGCCATGAATCGTTCAATAACTTAAGGTCTCGAGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAACCACAAACCATAGAATCACTCAATCTATTAAAAATGAGGAACACCGAATTCATTATTGCATTAAATAAGGTTGATAGGCTTTATGGCTGGAAAGTATGTCGCAATGCTCCAATTCGTAAAGCAATGTTGCAGCAGTCCAAGGATGTTCAAAATGAGTTTAATATGCGGCTCACTCAGATTGTTACTCAGTTCAAGGAACAAGGGCTAAATACTGAATTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTTCCTACAAGTGCATTAAGTGGTGAAGGAATCCCAGATATGTTATTACTATTGGTTCAGTGGACCCAAAAAACTATGACCGAAAAACTTACGTACAGTGAAGAAGTACAGTGTACTGTTTTGGAAGTCAAGGTTATTGAAGGCCATGGAACTACTATAGATGTTGTTTTAGTTAACGGCATTCTTCATGAAGGAGATCAAATAGTTGTAGCTGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGATCATATATCCACCACAAAGAAATCAAGGCTGCGATGGGTATCAAAATCACTGCCCAGGGACTTGAACATGCTATTGCTGGCGCAAGTTTATATGTGGTGAAGCCTGATGATGATTTGGAATATATTAAAAAGTCGGCCTTGGAAGACGTGGAGTCAGTCTTGAGCAGAATTGACAGGAGCGGTGAGGGCGTTTGTGTCCAGGCATCTACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTAAAAACTCCAGAAGTGAACATTCCTGTTAGTGCTATAAACATAGGCCCTGTACATAAGAAGGATGTGATGAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATTCTACTATATTGGCATTTGATGTCAAAGTCACTCCTGAAGCTAGGGAACTTGCAGATGAATTGGGTGTGAAAATTTTTATTGCGGATATCATTTATCATTTATTTGATCAATTTAAGGCTTACATGGACAACATTAAGGAGGAGAAAAAGAAAGAATCTGCTGATGAGGCAGTCTTCCCATGCGTTCTGAAGATCTTACCAAATTGCGTCTTCAACAAGAAGGATCCGATTGTTTTGGGAGTTGACATCCTTGAAGGCATTTTAAAGATTGGAACTCCAATTTGTATTCCTTCCCAAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCATAAACCGGTCGATTATGCAAAGAAAGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAGGAACAGCAGAAAATGTTTGGGAGGCATTTTGAGATTGATGATGAGCTTGTAAGCCATATTTCGAGAAGATCTATTGATATTCTCAAAACTAATTATCGGGATGACCTGTCTATGGATGAATGGAAGCTGGTGGTGAAATTGAAGAGTCTTTTCAAGATACAATGA 3894 0.4199 MGKKKPTIRDDENPPQQGGGGKSKKKAPIIDDDEYSIGTELSEETAAPVVVDEKPGKKKGKKGNAKSSAKDNGDDFDVVDDDVPEIVFAGKKKGKSKKSGGGSVFSAAAGFGLLGDEEDGDDKDKDDDDDEEKSELRGEGDGDEDDEPIVFTGKKKKSSKGSKKGGGSLFSALDEIDDGDEESKDEKAEDDDDDEDIGSITFSGKKKKSSKSKKAASLLSTAIPDEDSVSVSESAKGGDENDEDDISLAFTGKKKSSKKKSGGAAAKVSDESVDAVEAEKPSVGEVSNANVDNGNISKSEEVVGNSKNKKKNKKKSGRTKEEEDDLDKILAELGEAPPTAKPAAPPQQDDKVQPAPEVGSAAGASVEKEGEEDTVESAAAKKKKKKKEKEKEKKAAAAAAAAGSAPVTETVEEKAELSEPKKNDSKTNKKVPKHVREMQEQIARRQEAEERKRKEEEEKLRKEEEERKKQEELERQAEEAKRIKKEKEKERLARKKLEGKLFTAKQKEENRRREIMLRQIINSTGGLTLPSGDTGAPAKKPVYQTKKGKSTNRNHNGAGAVKTDESVEKKEPTADLDLKEPEKVEEVESVRMEDKVELPEAVEEDAVEDDDDEVDWDAKDFDDVNLNGKNAFADEEVDSEPEQIGKKEIKNVPAKNAGAKNKTVSKPVAEEIEDRKQAKVVVEDKKKKHDPQQSAVPPKPSEGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIIALNKVDRLYGWKVCRNAPIRKAMLQQSKDVQNEFNMRLTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSALSGEGIPDMLLLLVQWTQKTMTEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGILHEGDQIVVAGMQGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLEYIKKSALEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSAINIGPVHKKDVMKASVMLEKKREYSTILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYMDNIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQEFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKTNYRDDLSMDEWKLVVKLKSLFKIQ* 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 542 622 - -
Tpr1g0844 1297 Gene3D - 700 927 IPR027417 -
Tpr1g0844 1297 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1297 IPR015760 -
Tpr1g0844 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 706 996 IPR027417 -
Tpr1g0844 1297 SUPERFAMILY Translation proteins 1164 1296 IPR009000 -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 666 693 - -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 316 331 - -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 286 302 - -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 174 197 - -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 109 498 - -
Tpr1g0844 1297 CDD aeIF5B_II 929 1035 - -
Tpr1g0844 1297 Coils Coil 368 400 - -
Tpr1g0844 1297 CDD IF2_eIF5B 708 918 - -
Tpr1g0844 1297 Pfam Elongation factor Tu GTP binding domain 709 917 IPR000795 GO:0003924|GO:0005525
Tpr1g0844 1297 Pfam Translation-initiation factor 2 1035 1146 IPR023115 -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 655 702 - -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 366 383 - -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 562 598 - -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 50 74 - -
Tpr1g0844 1297 Gene3D Translation factors 928 1046 - -
Tpr1g0844 1297 Gene3D Translation factors 1160 1297 - -
Tpr1g0844 1297 CDD IF2_aeIF5B_IV 1168 1263 - -
Tpr1g0844 1297 Pfam Elongation factor Tu domain 2 944 1022 IPR004161 GO:0005525
Tpr1g0844 1297 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1031 1159 IPR036925 -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 232 252 - -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 412 498 - -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 1 80 - -
Tpr1g0844 1297 TIGRFAM small_GTP: small GTP-binding protein domain 710 834 IPR005225 GO:0005525
Tpr1g0844 1297 Coils Coil 435 500 - -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 115 146 - -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 599 619 - -
Tpr1g0844 1297 Gene3D - 1047 1153 IPR036925 -
Tpr1g0844 1297 MobiDBLite consensus disorder prediction 545 559 - -
Tpr1g0844 1297 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 705 921 IPR000795 GO:0003924|GO:0005525
Tpr1g0844 1297 PRINTS GTP-binding elongation factor signature 709 722 IPR000795 GO:0003924|GO:0005525
Tpr1g0844 1297 PRINTS GTP-binding elongation factor signature 773 783 IPR000795 GO:0003924|GO:0005525
Tpr1g0844 1297 PRINTS GTP-binding elongation factor signature 789 800 IPR000795 GO:0003924|GO:0005525
Tpr1g0844 1297 PRINTS GTP-binding elongation factor signature 825 834 IPR000795 GO:0003924|GO:0005525
Tpr1g0844 1297 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0844 Tpr-Chr1 7127333 7136092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0844 1 1297 Eukaryotic Initiation Factors Gene Family AT1G76810 60.712 0.0 1191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0844 K03243 - gmx:100814875 1503.42