Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0843 ATGGCATCCAATAATTCATCCATGAACCAAACAAAATTTGTACATCAAAATAGTACTAACAATGAACAAAATGCAACACTAGAGATCATTGAAAGCAATGAATTTGATTACTCAAAAAGATCACAATGGCTTCGCGCCGCGGTTTTAGGAGCTAATGATGGATTAGTTTCAACAGCATCACTAATGATGGGTGTAGGAGCAGTAAAACAAGACATAAAAGCCATGATCTTGTCAGGTTTTGCTGGACTTGTAGCTGGTGCTTGTAGCATGGCAATAGGTGAGTTTGTTTCGGTTTATTCACAACTTGACATCGAAATCGCACAATTAAAAAGAGAGAAAAATATTGAAAGAGGTGATAATATTGAAGAGGAAGATGTTATTGAGAAAGAAAGTTTGCCAAATCCTTTACAAGCAGCAGCAGCTTCAGCTTTAGCATTTTCAATAGGTGCAATGGTGCCACTTCTTGCAGCATCTTTTATTAAAGGTTATAAGGTAAGGGTAGGTGTTGTTTTGGGAGCTGTTAGTTTTGCTTTGGTTGTGTTTGGTTGGTTGGGAGCAGTGTTGGGTAAGGCTCCAATTTTAAAGTCATGTTTGAGAGTCTTGCTTGGAGGTTGGGTTGCTATGGCTATTACTTTTGGGCTAACAAAGTTGATTGGGTCAAGTGGGCTTTAG 672 0.3854 MASNNSSMNQTKFVHQNSTNNEQNATLEIIESNEFDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILSGFAGLVAGACSMAIGEFVSVYSQLDIEIAQLKREKNIERGDNIEEEDVIEKESLPNPLQAAAASALAFSIGAMVPLLAASFIKGYKVRVGVVLGAVSFALVVFGWLGAVLGKAPILKSCLRVLLGGWVAMAITFGLTKLIGSSGL* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0843 223 Pfam VIT family 44 124 IPR008217 GO:0005384|GO:0030026
Tpr1g0843 223 Pfam VIT family 123 215 IPR008217 GO:0005384|GO:0030026
Tpr1g0843 223 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 4 220 IPR008217 GO:0005384|GO:0030026
Tpr1g0843 223 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 2.1 4 220 - -
Tpr1g0843 223 CDD Nodulin-21 42 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0843 Tpr-Chr1 7123226 7124200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0843 17 223 Nodulin-like Gene Family AT3G43660 68.599 1.05e-101 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0843 K22736 - gmx:100814343 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0782 2 9470682 9471812 Tpr1g0843 1 7123226 7124200 PCT