Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0834 ATGGCAGATCTTGTTAATCACAGGAATGCAGACCGTGACATTCAGCAGGCATTGATTGCTTTGAAAAAGGGTGCTCAATTACTTAAATATGGTCGTAAAGGAAAGCCGAAGTTTTGTCCATTTAGACTTTCCAAGGATGAGTTGTCATTAATCTGGTTTTCAAGTAGCGAAGAAAGAAGTCTGAAATTGTCTTCTGTCTCAAAAATTATTCCTGGACAAAGAACTGCTGTTTTCCAGCGATTTCCGCGTCCTGAGAAGGATTATTTATCTTTTTCACTAATTTATAACCACGGGAAGCGATCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTCTCGGGGCATTGATATCTTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGATGGTGTGATGGAGGCCTGCATCTTGATGATAGTAAAGACTTGACCTCAAACAGTCCTAGTGAAAGTTCAGTCCGTGCTTCTCAAGACATTAGTTCTCCTGACGTTTCTCCTAGTGTGCCAAACACTTCTCCAAAGTCCTTTCAACCTGAAAATACCTTAAATTCCGAAAGGTCACATGCACCATCAAACATGCAAGTGAAAGGGTCTAGTTCAGATGTTTTTCGTGTTAGTGTTTCAAGTGCCCCCAGTACATCCAGTCATGGGTCGGCACCGGATGATTATGATGCTCTTGGAGATGTATACATATGGGGAGAGGTTATCTCTGAGAATGTTGTAAAAATTGGTGGTGATAAAAATGTCAGTTATTGTAATCCGAGAACTGACATTCTCCTCCCGAAGCCACTCGAATCCAATGTGGTTTTGGATGTACTTCAAATAGCATGTGGTGTTAAACATGCTGCTCTAGTTACAAGGCAAGGTGAAATGTTTACATGGGGTGAAGAATCTGGTGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTAGCTTCTTCAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCTGGTGAAATATATACATGGGGTGATGGCACTCACAATGCTGGACTTCTTGGTCATGGAACAAATGTTAGTCATTGGTTACCGAAGAGAATCGCAGGTCCACTAGAGGGGCTTCAGGTTGCTTTTGTCACTTGCGGTCCGTGGCACACAGCCTTGATAACTTCAACTGGGCAGCTATTTACATTTGGCGATGGAACGTTTGGTGTCCTCGGCCATGGAGATAGAGAAAATATTTCATATCCTAGAGAAGTAGAATCGTTGTCTGGGTTGAGGACTGTATCTGTTGCATGTGGAGTGTGGCATACTGCAGCTATTGTAGAAGTCATTGTGACACAATCTAGTGCAAGTATATCATCGGGTAAATTGTTTACTTGGGGAGATGGAGATAAGAATCGTCTAGGACATGGAGATAAAGATGCTCGGCTTGAACCAACTTGTATATCTGCTCTTATCGATCACAATTTTCATAGAATTGCTTGCGGGCACAGTTTGACAGTAGGCTTGACAACGTCCGGACGCGTTTTCACGATGGGTAGCACTGTTTATGGCCAGCTTGGGAATCCCCAGTCTGAAGGAAAACTTCCCTGTTTGGTTGAAGACAAACTTGCGGGAGAATGCGTCGAAGAAATTGCATGCGGAGCTTATCATGTTACTGTTTTAACCTCCAGGAATGAAGTGTATACTTGGGGGAAGGGTGCAAATGGAAGATTGGGTCACGGAGATGTTGAAGATCGAAAAACACCAACTTTGGTTGAAGCCTTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCGGCTGCGATATGCCTACATAAGTGGGTATCTGGTGCCGAGCAGTCTCAGTGCTCTACTTGTAGACAGGCATTTGGGTTCACTAGAAAGCGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCACTCATGCAGCTCACGAAAAGCATTAAGAGCAGCCCTTGCTCCTAATCCTGGGAAGCTGTATCGTGTTTGTGATACTTGTTTTGTGAAATTGAGCAAGGTTGCAGAATCCAGCAATAATAATCGGAGGAATGCAATGCCTCGTTTTCCAGGAGAAAACAAGGACAGGTTAGAAAAGTCTGAGCTAAGGTTGTCGAAACCAGCCCTGCCTTCTAATATGGATTTGATAAAGCAATTAGATAGTAAGGCAGCCAAACAGGGGAAAAAGGCTGATACGTTCTCTCTTCGCACCTCACAAGCTCCATCTTTGCTACAGCTGAAAGATGTTGTTATGTCTTCTGCTATGGACCTGAAACGCACAGTCCCGAGACCTATTCTTACACCGTCTGGAGTGAGTTCCAGGTCCGTGTCACCTTTCTCTAGAAGATCGAGCCCTCCTCGTTCTGCTACACCCATTCCAACAACATCCGGACTTGCCTTCTCAAAAAGCATTACTGATAGTTTGAAGAAAACAAACGACCTTTTGAATCAAGAAGTGCTGAAGCTGCGTTCTCAGGTTGAGACCCTGAGACAGAGATGTGAGCTGCAAGAATTAGAGCTTAAAAAGTCAACAAAAAAGACTCAAGAAGCTATTGCACTGGCTACTGAGGAATCTGCCAAATCCAAGGCTGCAAAAGAAGTTATTAAGTCACTTACAGCACAGCTGAAAGATCTGGCAGAGAGGCTTCCGCCTGATGCTTATGATGCCGATAAAATCAAACCAGCTTACCTGCCTAATGGTTTCGTCGGTTTCGTCGAGCCAAATGGCATCCGTCATCCAGACTCAAACGGGGAGCACCGCCACACAAGGGCAGAGTCGATCAGTGGCTCCAGTGTGGCTTCCATAGGACTTGAATCTTCTCTGATGAATAGAATTGATGGGAATTCACCTGGAAGCTATGCAACTTATTTGTACCAGCAAAACCGAGGATCTGTGACATCTAATGGGACAGATGATCACCGAGACGTTAAATTGCCAAACGGTGGTGGCACGATTCAGGCAACCAACAGTAGTGTGTCGGATACTGTTGATGGTAGGGATTCTGGGAATTTCCGAGATGATGAGAGTGGTTCGAGATTAAGGAATGATGTGTTGCCTGCTAATGCTAACAGTAATCAAGTTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACTCTGGTTGCCATGAGCGACGGAACAAGAGATTTGAAGAGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGTGATAAGGTATATGAAAAGTACAATGTTCGTAACACAGACAAGTCATCCAGCCAAGGTGCGCGTAAGGCAGAAGATGCCGGTTCACCTGTTCTATAA 3369 0.4455 MADLVNHRNADRDIQQALIALKKGAQLLKYGRKGKPKFCPFRLSKDELSLIWFSSSEERSLKLSSVSKIIPGQRTAVFQRFPRPEKDYLSFSLIYNHGKRSLDLICKDKVEAEVWIAGLGALISSGQGGRSKIDGWCDGGLHLDDSKDLTSNSPSESSVRASQDISSPDVSPSVPNTSPKSFQPENTLNSERSHAPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVISENVVKIGGDKNVSYCNPRTDILLPKPLESNVVLDVLQIACGVKHAALVTRQGEMFTWGEESGGRLGHGVGKNVVQPRLVEALASSTVDFVACGEFHTCAVTMAGEIYTWGDGTHNAGLLGHGTNVSHWLPKRIAGPLEGLQVAFVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENISYPREVESLSGLRTVSVACGVWHTAAIVEVIVTQSSASISSGKLFTWGDGDKNRLGHGDKDARLEPTCISALIDHNFHRIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSEGKLPCLVEDKLAGECVEEIACGAYHVTVLTSRNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKLYRVCDTCFVKLSKVAESSNNNRRNAMPRFPGENKDRLEKSELRLSKPALPSNMDLIKQLDSKAAKQGKKADTFSLRTSQAPSLLQLKDVVMSSAMDLKRTVPRPILTPSGVSSRSVSPFSRRSSPPRSATPIPTTSGLAFSKSITDSLKKTNDLLNQEVLKLRSQVETLRQRCELQELELKKSTKKTQEAIALATEESAKSKAAKEVIKSLTAQLKDLAERLPPDAYDADKIKPAYLPNGFVGFVEPNGIRHPDSNGEHRHTRAESISGSSVASIGLESSLMNRIDGNSPGSYATYLYQQNRGSVTSNGTDDHRDVKLPNGGGTIQATNSSVSDTVDGRDSGNFRDDESGSRLRNDVLPANANSNQVEAEWIEQYEPGVYITLVAMSDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYEKYNVRNTDKSSSQGARKAEDAGSPVL* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0834 1122 MobiDBLite consensus disorder prediction 997 1013 - -
Tpr1g0834 1122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 698 IPR013083 -
Tpr1g0834 1122 MobiDBLite consensus disorder prediction 1014 1028 - -
Tpr1g0834 1122 Gene3D - 13 129 IPR011993 -
Tpr1g0834 1122 SUPERFAMILY FYVE/PHD zinc finger 621 696 IPR011011 -
Tpr1g0834 1122 MobiDBLite consensus disorder prediction 1100 1122 - -
Tpr1g0834 1122 CDD FYVE_like_SF 630 683 - -
Tpr1g0834 1122 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Tpr1g0834 1122 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Tpr1g0834 1122 SUPERFAMILY PH domain-like 13 123 - -
Tpr1g0834 1122 Pfam Transcription factor regulating root and shoot growth via Pin3 1043 1098 IPR013591 -
Tpr1g0834 1122 Pfam Transcription factor BRX N-terminal domain 871 906 IPR027988 -
Tpr1g0834 1122 MobiDBLite consensus disorder prediction 694 713 - -
Tpr1g0834 1122 CDD PH_PLC_plant-like 12 124 - -
Tpr1g0834 1122 MobiDBLite consensus disorder prediction 781 811 - -
Tpr1g0834 1122 Pfam FYVE zinc finger 621 687 IPR000306 GO:0046872
Tpr1g0834 1122 SUPERFAMILY RCC1/BLIP-II 232 622 IPR009091 -
Tpr1g0834 1122 MobiDBLite consensus disorder prediction 994 1036 - -
Tpr1g0834 1122 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 281 291 IPR000408 -
Tpr1g0834 1122 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
Tpr1g0834 1122 MobiDBLite consensus disorder prediction 780 811 - -
Tpr1g0834 1122 PRINTS Chromosome condensation regulator RCC1 signature 278 291 IPR000408 -
Tpr1g0834 1122 PRINTS Chromosome condensation regulator RCC1 signature 297 313 IPR000408 -
Tpr1g0834 1122 PRINTS Chromosome condensation regulator RCC1 signature 347 363 IPR000408 -
Tpr1g0834 1122 PRINTS Chromosome condensation regulator RCC1 signature 388 404 IPR000408 -
Tpr1g0834 1122 PRINTS Chromosome condensation regulator RCC1 signature 404 418 IPR000408 -
Tpr1g0834 1122 PRINTS Chromosome condensation regulator RCC1 signature 506 524 IPR000408 -
Tpr1g0834 1122 PRINTS Chromosome condensation regulator RCC1 signature 564 585 IPR000408 -
Tpr1g0834 1122 Gene3D - 457 624 IPR009091 -
Tpr1g0834 1122 Coils Coil 827 861 - -
Tpr1g0834 1122 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Tpr1g0834 1122 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 440 450 IPR000408 -
Tpr1g0834 1122 MobiDBLite consensus disorder prediction 148 226 - -
Tpr1g0834 1122 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
Tpr1g0834 1122 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1105 - -
Tpr1g0834 1122 ProSiteProfiles BRX domain profile. 1044 1099 IPR013591 -
Tpr1g0834 1122 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1105 - -
Tpr1g0834 1122 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 625 687 IPR017455 -
Tpr1g0834 1122 SMART fyve_4 619 688 IPR000306 GO:0046872
Tpr1g0834 1122 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 233 294 IPR000408 -
Tpr1g0834 1122 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Tpr1g0834 1122 Coils Coil 876 896 - -
Tpr1g0834 1122 Gene3D - 358 456 IPR009091 -
Tpr1g0834 1122 Gene3D - 179 357 IPR009091 -
Tpr1g0834 1122 Pfam Regulator of chromosome condensation (RCC1) repeat 516 564 IPR000408 -
Tpr1g0834 1122 Pfam Regulator of chromosome condensation (RCC1) repeat 347 398 IPR000408 -
Tpr1g0834 1122 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Tpr1g0834 1122 Pfam Regulator of chromosome condensation (RCC1) repeat 402 450 IPR000408 -
Tpr1g0834 1122 Pfam Regulator of chromosome condensation (RCC1) repeat 295 343 IPR000408 -
Tpr1g0834 1122 Pfam Regulator of chromosome condensation (RCC1) repeat 464 511 IPR000408 -
Tpr1g0834 1122 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Tpr1g0834 1122 MobiDBLite consensus disorder prediction 148 225 - -
Tpr1g0834 1122 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 401 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0834 Tpr-Chr1 6986844 6996475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0834 1045 1116 Major Intrinsic Protein MIP AT1G31880 45.833 2.83e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0834 - - gmx:100783270 1878.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0834 1 6986844 6996475 Tpr1g0834 1 6986844 6996475 ECH
Tpr2g0770 2 9280788 9291668 Tpr1g0834 1 6986844 6996475 PCT