Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0816 ATGGATGATAAAGCTGTGTTATCTATCTTAGGTGTTTTTACTGGGTTGACTGTGGGTGTGGGAATATGGGATACTATTAGATGCCGTCGTAAATATGATGACAAGACGATTGTGATGGAACTCATGAAACTAGTCAATGAAGGAAAGGATAGTGGAGTCACATTCAAGGACTTTCCTTATTTCTTAAGTGAAAAAATCAAAATTTTGTTGACAAGTGCTGGATATGTTCATTTAAAACAACATCGTTTAACCGAGCACACGCGGAACCTTTCGCCAATAAGCCAATCTATTTTGCTTTCTGGACCTGCAGAATTTTATCAGGAAAATCTCGCCAAAGCTTTAGCACATTACTTTGAATCGAAGTTACTGGTTCTCGATGTTAATTACTTCTCTTCGGAGTTGCAGAAGAAATACGAATGGCCTACAAAAGAACCAGTTAGTTCAACTACAGCTCCTTTGAAGTGTACAAACAGCTTCTGTTTTGATGAAAATTGTTTCCTAGATTCACTCTACAAGGTACTGGTTTTTATATCAGAATCTGATTCTGTTATCTTGTACATCAAGGATGTTGAGAAGATCTTTCTTCATTCAAATAGGATGTACGGATTGTTCCAAAATCTATTAAAAAAACTTTCAGGTACAGTGTTGGTACTTGGTTCTCGGACTTATGAGTCAGAAGATAAATGTACAAAAGTTGATAAAAGACTCACTATGTTATTCCCTTACAACATTGAGATCAAACTGCCTGAAGATAAGACTCATCTCAAAACCTGGAAAGACCAACAAGAAGAGGCCGTGAAAAAGACTCAGTTGGAACATAACCGAAACCTCATTACTAAAGTGCTTGCAGAAAATAACATTGAATGTGAAGACTTGAATTCTATCGTCCATAAAGACATTATGAAACTCAGTGATCTCATCAAAGAGATCGCGGCATCTGCAATTTTTTATCAATTAATGGAGAACAAAAATCCAGAGTACCGAAATGGAAAGCTAATTATATCTGCTGAGAGTTTGTGCCATGTATTGAAGGTGTTCCAGGAGGGTGAAAGTAAAAAAGATTCAAAGGAGCCTGACAATGCCTATGAGAAGTGCATAAGACAAGAGCTTATCCCTGCAAAGGAGATAAAGGTGACTTTTTCAGATATTGGTGCATTGGATATTGTTAAAGCATCACTTCAAGAAGCAGTTATGCTTCCCCTTAGAAGACCAGATTTATTCAAAGCTAATGGAGTTTTGAAGCCATGTAAAGGTGTATTGCTTTTTGGACCTCCCGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCTTCGTCCACAATCCAATCAGTGTGGGACGGACAATCTGAAAAGAACGTCCGAGCTCTGTTTTCACTAGCAGCAAAGGTTGCCCCGACTATTATTTTCATTGATGAAGTTGATAGCATGCTTGGACAACGGTCTGCAATGAGAAGGGTTCAAAAGGAATTCATGTCCCGTTGGGATGGACTATTGTCAAAACCTGATGACAGGATTATTGTTCTTGGTGCCACCAATATGCCATTTGACCTTGATGAAGCAATTATAAGGCGGTTCCAGCGCAGGATCATGGTTGGTCTTCCGTCTGCTGAGGACAGGGAAATGATCTTGAAAACTATCTTAGCTGCGGAAAAACACGAAGATATAGACTTCAAAGAGCTCTCAACTATGACAGAAGGATATAGTGGAAGTGATCTTAAGAATCTGTGCACGACTGCAGCTTATCGCCGTGTTGAGGAGCTACTGCAACAGGAGAAGGATAATCAAGTGGTTTCCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCAAAGAATAAGGTGGCTGCAAGTTTTGCTGAAGAAGGATCAATGATGAACAAGTTGAAGGCATGGAATGATATGTATGGAGAAGGAGGGTCAAAGAAAGACAAAGTTTCTTCAAAATGGTCAAATAAAGACAAAGTTTCTTCAAAAGTAGATAGATCTTGTGATGACACTGACTTCGAGGAGAACATAAGACAAGACCTTATTCCTGCAAATGAGATAAAGGTGTCTTTTTCAGATATTGGAGCATTGGATGATGTTAAAGAATCACTTCAAGAAGCGGTTATGCTTCCCATTAGAAGACCTGATCTATTCAAAGGTCACGGGATTCTGAAGCAGTGTAAAGGTGTATTGCTTTTTGGACCTCCCGGTACAGGAAAAACTATGCTTGCAAAGGCAATTGCAAACGAAGCTGGAGCCAGTTTCATCAACGTCTCTGCGTCATCCATCATTCACAAGTGGTTCGGACAATCTGAAAAGAGTGTCCGGGCTTTGTTTTCTCTAGCAGCAAAGGTTGCCCCAACTGTTATTTTCATTGATGAAATTGATAGCATGCTTGCGCAGAGGGGGTCTGAATCTGGAAGCAACACAATGAGAAGCATTAAAAATGAATTCATGTCCCGTTGGGATGGACTATTGTCAAAACCTGATGAGAGAATTATTGTTCTTGGTGCCACCAACATGCCATTTGACCTTGATGAAGCAGTTATAAGACGGTTCCAGCGCAGGATCATGGTAGGTCTTCCGTCTGCTGAGAACAGGGAAACTATATTGAAAACTATCTTAGCTGAGGAAAACCATGATGATATAGACTTCAAAGAGCTCTCAACTATGACAGAAGGATTTAGTGGAAGTGATCTTATGAATCTGTGCACGACGGCAGCTTATCGCCCCGTTAAGGAGCTACTGCAACAGGAGAAGGATAATCAAGTGGTTTCCCTCAGACCTTTAAACATGGAAGACATGAGACAGGCAAAGAATAAGGTGACTGCAAGTTTTGCTGCAGAAGGATCAATGATGAACAGGTTGAAGGAATGGAATGATATATATGGAGAAGGAGGTTCACGGACGAAAGAAGCACATAATCAGCTCAGTTATTATATTTAG 2964 0.4005 MDDKAVLSILGVFTGLTVGVGIWDTIRCRRKYDDKTIVMELMKLVNEGKDSGVTFKDFPYFLSEKIKILLTSAGYVHLKQHRLTEHTRNLSPISQSILLSGPAEFYQENLAKALAHYFESKLLVLDVNYFSSELQKKYEWPTKEPVSSTTAPLKCTNSFCFDENCFLDSLYKVLVFISESDSVILYIKDVEKIFLHSNRMYGLFQNLLKKLSGTVLVLGSRTYESEDKCTKVDKRLTMLFPYNIEIKLPEDKTHLKTWKDQQEEAVKKTQLEHNRNLITKVLAENNIECEDLNSIVHKDIMKLSDLIKEIAASAIFYQLMENKNPEYRNGKLIISAESLCHVLKVFQEGESKKDSKEPDNAYEKCIRQELIPAKEIKVTFSDIGALDIVKASLQEAVMLPLRRPDLFKANGVLKPCKGVLLFGPPGTGKTMLAKAIANEAGASFINVSSSTIQSVWDGQSEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRSAMRRVQKEFMSRWDGLLSKPDDRIIVLGATNMPFDLDEAIIRRFQRRIMVGLPSAEDREMILKTILAAEKHEDIDFKELSTMTEGYSGSDLKNLCTTAAYRRVEELLQQEKDNQVVSLRPLNMEDMRQAKNKVAASFAEEGSMMNKLKAWNDMYGEGGSKKDKVSSKWSNKDKVSSKVDRSCDDTDFEENIRQDLIPANEIKVSFSDIGALDDVKESLQEAVMLPIRRPDLFKGHGILKQCKGVLLFGPPGTGKTMLAKAIANEAGASFINVSASSIIHKWFGQSEKSVRALFSLAAKVAPTVIFIDEIDSMLAQRGSESGSNTMRSIKNEFMSRWDGLLSKPDERIIVLGATNMPFDLDEAVIRRFQRRIMVGLPSAENRETILKTILAEENHDDIDFKELSTMTEGFSGSDLMNLCTTAAYRPVKELLQQEKDNQVVSLRPLNMEDMRQAKNKVTASFAAEGSMMNRLKEWNDIYGEGGSRTKEAHNQLSYYI* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0816 987 ProSitePatterns AAA-protein family signature. 516 535 IPR003960 GO:0005524|GO:0016887
Tpr1g0816 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 693 928 IPR027417 -
Tpr1g0816 987 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 602 655 - -
Tpr1g0816 987 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 672 926 - -
Tpr1g0816 987 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 356 603 - -
Tpr1g0816 987 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 149 354 - -
Tpr1g0816 987 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 146 - -
Tpr1g0816 987 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 925 986 - -
Tpr1g0816 987 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 423 442 - -
Tpr1g0816 987 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 871 889 - -
Tpr1g0816 987 Gene3D - 377 643 IPR027417 -
Tpr1g0816 987 Gene3D - 694 966 IPR027417 -
Tpr1g0816 987 CDD AAA 417 544 - -
Tpr1g0816 987 Gene3D - 868 948 - -
Tpr1g0816 987 Gene3D - 545 625 - -
Tpr1g0816 987 CDD AAA 734 867 - -
Tpr1g0816 987 Pfam AAA+ lid domain 888 924 IPR041569 -
Tpr1g0816 987 Pfam AAA+ lid domain 565 600 IPR041569 -
Tpr1g0816 987 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 146 - -
Tpr1g0816 987 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 149 354 - -
Tpr1g0816 987 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 672 926 - -
Tpr1g0816 987 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 602 655 - -
Tpr1g0816 987 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 356 603 - -
Tpr1g0816 987 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 925 986 - -
Tpr1g0816 987 Pfam ATPase family associated with various cellular activities (AAA) 736 866 IPR003959 GO:0005524|GO:0016887
Tpr1g0816 987 Pfam ATPase family associated with various cellular activities (AAA) 419 543 IPR003959 GO:0005524|GO:0016887
Tpr1g0816 987 ProSitePatterns AAA-protein family signature. 839 858 IPR003960 GO:0005524|GO:0016887
Tpr1g0816 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 624 IPR027417 -
Tpr1g0816 987 SMART AAA_5 732 869 IPR003593 -
Tpr1g0816 987 SMART AAA_5 415 546 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0816 Tpr-Chr1 6818703 6823740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0816 413 936 Calmodulin-binding Proteins AT3G56690 32.793 3.33e-74 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0816 - - cam:101506297 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0816 1 6818703 6823740 Tpr1g0816 1 6818703 6823740 ECH