Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0788 ATGAAGATTCCCCGACAAAACAACAAGTCTTCTTCTAGAGTTGTTCGCTACGATCCATATGCATTGGCGTTTCTTAAGGCAATACAAGTTACGTTTAAAGATAAGAAGGAAAAACATAATGAGATTGTGAAACTCGTAAAAGATTTCAAGGCTAGAGGTAACTCCTCAACAAAAAGAATGAAGGAGTTGCTTAAAGGGCATACAAATTTAATTTTGTTATTCAACACCTTCATGCCAAAGGAACATCGAATCACACTTTCATCTCATCTTGAGCTTCCATGGGATGTGCTTGATATCATTATCAAAAAATTAGATTTTGATGATCTCTTTCAGTTTGCTGGTGTGTCTAAGAATTGGAGGGCTTTTCATAAAATTTATTGGACAAATTTCTTGACCTCTCAAAAACCATTACTTTTTCAATTTTCGATGGGTGGTCTTAAAGAATTCTTTTCCTTTATTAGCATATCCGAGCAAAAAGTTTATTGCTTCAAGATGAAGTGCTTTGGCTTCCATATTATGTTTTCTAGCGGATATTTTATCATGGTGGATTCTGATCATTCATTTCTGCTAATTAATCCGTTTACAAGAACAAAGAAGGTAATTCCCTCTAAAATTGAATCCATGTTTTACCTTAATTCTGCCCTACTTGCTTTTGCCAAATGCTCTGAGGAATTTGTCTTAGTGGTTTTATTATGCAATTTTCATTTGAAAGTTTATCAATCTAGAAATCGTGGTTGGGTTACTTATTCAATAATAAAAAATCTAGGTCGTGTTGTTGACTTTGTGGTTTTACATAATATAATATATGTTATCACTGAGAAGGCCAATATAGGAGTGCTTAACTTGAATTCTTCAAATATTAGATATCTAAAACTGAAGAGTACTCCCAATGTAATTACCTCACACCTTAGCTTGGTTAATTGTGATGAGCAACTTTTAGTGGTTGATTTTGATTTTACCTCCAAGACAATAATGAATGTGTACAAGATAGACTTCTCAACCATGAATTATGTCAAACTTGAGAGTTTGGGCGACATTGCATTATTTCATGTTTGGGATCCTCTCAAGAGTAAATGTTATGCATTAAGCAACCCAAATAGGTGGGGATATGAGAGCAACTCTATTTATGCACTCAACCATGAGTCTACAATTTGTAGTGTGTCTACATTGGATGATAAAAAATTGCAAAAATGCATTACCCTTCCAGCTCCTCGTGGAACAAGTTTCAGCATGGTTGATTGGTGTTTTAGACATCTAAGATATGAAGTAGATTATTCTCTAGTTAAATAA 1290 0.3388 MKIPRQNNKSSSRVVRYDPYALAFLKAIQVTFKDKKEKHNEIVKLVKDFKARGNSSTKRMKELLKGHTNLILLFNTFMPKEHRITLSSHLELPWDVLDIIIKKLDFDDLFQFAGVSKNWRAFHKIYWTNFLTSQKPLLFQFSMGGLKEFFSFISISEQKVYCFKMKCFGFHIMFSSGYFIMVDSDHSFLLINPFTRTKKVIPSKIESMFYLNSALLAFAKCSEEFVLVVLLCNFHLKVYQSRNRGWVTYSIIKNLGRVVDFVVLHNIIYVITEKANIGVLNLNSSNIRYLKLKSTPNVITSHLSLVNCDEQLLVVDFDFTSKTIMNVYKIDFSTMNYVKLESLGDIALFHVWDPLKSKCYALSNPNRWGYESNSIYALNHESTICSVSTLDDKKLQKCITLPAPRGTSFSMVDWCFRHLRYEVDYSLVK* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0788 429 PANTHER OS06G0113600 PROTEIN 77 424 - -
Tpr1g0788 429 PANTHER OS06G0113600 PROTEIN 77 424 - -
Tpr1g0788 429 ProSiteProfiles F-box domain profile. 86 130 IPR001810 GO:0005515
Tpr1g0788 429 ProSiteProfiles PAH domain profile. 13 81 IPR003822 GO:0006355
Tpr1g0788 429 Gene3D Paired amphipathic helix 21 79 IPR036600 GO:0006355
Tpr1g0788 429 Pfam F-box domain 90 121 IPR001810 GO:0005515
Tpr1g0788 429 SUPERFAMILY F-box domain 87 140 IPR036047 GO:0005515
Tpr1g0788 429 SUPERFAMILY PAH2 domain 20 80 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0788 Tpr-Chr1 6651571 6659139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0788 21 100 WRKY Transcription Factor Family AT4G12020 37.349 1.54e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0788 - - mtr:MTR_7g083950 434.106