Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0746 ATGGTGGAGAAGGAAGTGATGATGTACTCTCCGCTCAATCTTTATCCTGTTGACATCCCTATACATATTTTTAATGATAACTATGATACCGATTATTTGATAGATGTGATGGGAGTCTTGAAAGCTGTGGGTGTTGAAAAGGTTTATTCTCGAAATGGAAGCGAATCAAAGATGATTCCTATAGAGCTGAACTACGATGGATTCTGTTTCAAAGTTACACTCTTTGGACCTTATGCGGACGAGTTGAACGCTTTTATCGCATCTGGTGAAGCAGATAATGCTGTCGTTGCTGTTTTGTTGGCCAAAGTCAAAATGTTCCAAGGTCAACCAACTATTCAAAACACCATATACGCCACTAAACTGGTTTTCAATCCTGTTTACACATCTGCGGTTGATCTCAAGAAAAGGATGCTTGGGAAAAGTGCTACTCCATCACCTGGTATTTCTCTATTAAAAGATACTTCTAAAATTAGCAATGAGGATGATTTTCTCAATTTGACGCCAATGACAACTATTGACGGAGTTAAGGATTGTAGTGTGGAAAAGACATTTGCTGTATTTGGTACGGTGAATTTTATCGATGGTTCTGAATGGTGGTACACTGCGTGCACCTGTAATAAAAAAGTTTATCCAGATGAGCGTATGTACTTTTGTCCTAAGTGCAACAAGCATGTCATCAACGTCTCTCCAAGGTACATGATTAAGGTCAAAGTTATTGACCATACTGATTCTGCTACCTTTCTCATTTTTTATCGTGATGCTACCGATCTATTCAATAAATCTTGTGCTGATATGATCGAAGCTTTTGGGATGGGTAATTTGGCCGATATTCCAGAAGAGATTGGTGATCTGGTTGATAAGTCATATCTTTTTAAGGTTGAAACCAATGTTGATCCTTCTGGCATGTACGAAAAATCTTTTAAGGTCAAGAAGATTGTGGCCGACCCTGTTTTGATTGAAAAGTTCAAAGCTAAATATGTAGAATATTTGTTTGATGCTTCGAGGAAGTTGATTTAG 1017 0.3795 MVEKEVMMYSPLNLYPVDIPIHIFNDNYDTDYLIDVMGVLKAVGVEKVYSRNGSESKMIPIELNYDGFCFKVTLFGPYADELNAFIASGEADNAVVAVLLAKVKMFQGQPTIQNTIYATKLVFNPVYTSAVDLKKRMLGKSATPSPGISLLKDTSKISNEDDFLNLTPMTTIDGVKDCSVEKTFAVFGTVNFIDGSEWWYTACTCNKKVYPDERMYFCPKCNKHVINVSPRYMIKVKVIDHTDSATFLIFYRDATDLFNKSCADMIEAFGMGNLADIPEEIGDLVDKSYLFKVETNVDPSGMYEKSFKVKKIVADPVLIEKFKAKYVEYLFDASRKLI* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0746 338 Gene3D - 18 143 IPR012340 -
Tpr1g0746 338 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 24 266 - -
Tpr1g0746 338 Gene3D - 155 327 IPR012340 -
Tpr1g0746 338 PANTHER REPLICATION FACTOR A 1, RFA1 24 266 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr1g0746 338 SUPERFAMILY Nucleic acid-binding proteins 27 136 IPR012340 -
Tpr1g0746 338 Pfam Replication factor-A C terminal domain 184 299 IPR013955 -
Tpr1g0746 338 SUPERFAMILY Nucleic acid-binding proteins 168 310 IPR012340 -
Tpr1g0746 338 CDD RPA1_DBD_C 184 321 IPR013955 -
Tpr1g0746 338 CDD RPA1_DBD_B_like 35 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0746 Tpr-Chr1 6299869 6304710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0746 26 258 Core DNA Replication Machinery Family AT2G06510 25.403 2.91e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0746 - - mtr:MTR_2g048560 447.203