Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0734 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGTGTTAGAAGAGGAGCTTGGACTCCTGAAGAAGACCAAGCTTTAGTTGACTACATCAACAAACATGGCCATGGAAATTGGCGTACACTCCCTAATCATGCAGGTCTCCTACGATGTGGTAAAAGTTGCCGACTTCGGTGGATAAACTATCTTCGTCCTGGCATCAAGCGTGGCCCATTTACTAATGAAGAAGAAACAACTATTATTCAACTTCATGCCTTGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAACTACAAGGAAGAACAGACAACGAGATTAAGAACTATTGGAACACTCATCTAAAGAAGCGAGTCCTTCAATCGCCAGGGGAAAAAAATTCATGTCTCATTCCTGATAAGAATGTTCAGTCTAATTCTCCGTCTACACGCCACATGGTACAGTGGGAGAGTGCGAGGGTTGAGGCGGAGACAAGGTTGTCAATGGAATCCACATTGCTTAATTCAGACTCCACGACAAAAACAAGCCCGGATTACTTTCTTCAACTTTGGCATTCTGAGGTTGGAGAGGCGTTTCGCAAAATCAAAGGAAAGGAAGAAGCATCGTCATCTTCACTATCATCATCAAAATTGGAGGAGTCATGTTCAAATGTCTCATTGCAGGTGAAAAGCACCGGAACACAAAGCTTGAAAGTGTCAACACCAAAGCATGAAGATGTCAACACAACTCAGGAACAAAAAGCAAGTAGCTACAAACCAAAGCTTGAAGATGATAGAGCTGGTTCAGATTCAGGCAACTATGAATTTCTTGATACTTCTGATTCTGCACTAAAGCACCTGTTACACATGCCTGATGATGATATAGGATTCTTGGGACAAACTGACAATTTCTTGAATCTCCTTGATGGTAGATGCGACTAA 912 0.4276 MGKAPCCEKHGVRRGAWTPEEDQALVDYINKHGHGNWRTLPNHAGLLRCGKSCRLRWINYLRPGIKRGPFTNEEETTIIQLHALLGNRWAAIASQLQGRTDNEIKNYWNTHLKKRVLQSPGEKNSCLIPDKNVQSNSPSTRHMVQWESARVEAETRLSMESTLLNSDSTTKTSPDYFLQLWHSEVGEAFRKIKGKEEASSSSLSSSKLEESCSNVSLQVKSTGTQSLKVSTPKHEDVNTTQEQKASSYKPKLEDDRAGSDSGNYEFLDTSDSALKHLLHMPDDDIGFLGQTDNFLNLLDGRCD* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0734 303 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr1g0734 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 292 - -
Tpr1g0734 303 CDD SANT 69 112 IPR001005 -
Tpr1g0734 303 SMART sant 13 63 IPR001005 -
Tpr1g0734 303 SMART sant 66 114 IPR001005 -
Tpr1g0734 303 CDD SANT 16 61 IPR001005 -
Tpr1g0734 303 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr1g0734 303 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr1g0734 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr1g0734 303 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 292 - -
Tpr1g0734 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr1g0734 303 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr1g0734 303 Gene3D - 69 143 - -
Tpr1g0734 303 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr1g0734 303 MobiDBLite consensus disorder prediction 221 260 - -
Tpr1g0734 303 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0734 Tpr-Chr1 6213036 6215399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0734 1 288 MYB Transcription Factor Family AT3G61250 51.333 6.76e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g0734 Myb_DNA-binding 4.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0734 K09422 - gmx:100782075 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0734 1 6213036 6215399 Tpr1g0734 1 6213036 6215399 ECH