Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0732 ATGGGGTTCCAACAATTAGAAAAGACAAAACCAAAACATAGGAAGGGTTTATGGTCTCCTGAAGAAGATCATAATCTCAGAAACTATATCCTTAAACATGGTCATGGATGCTGGAGTTCTGTCCCTATTAAAGCAGGCTTGCAAAGGAATGGAAAGAGTTGCAGATTAAGGTGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGGAAGTTCAGCAAACAGGAGGAGGAGACAATCCTAACCCTTCATCACATCTTAGGCAACAAGTGGTCACAAATAGCACAACATTTACCAGGAAGGACAGACAATGAGATAAAAAATTATTGGCATTCATATTTGAAAAAGAAAGTGGCCAAAGCTATGGAAATAGAATCTCATAAACAAATTCATCACCATGCTAGCTCAAGCTCAGATACATTGAACTCTTCACTCTCTCTTCAAAACCATGCAACTCAAGATCCACAAAATTACAACATAGCCAAAGAGATTCATCAAAGTTCCTTACCAAAACTCTTGTTTGCTGAATGGCTTTCACTTGATCAAGTAAATGGTAGGAACTCTACAAATTCACTTGACTCTTTGGTCATGAAAAATGGATTTGATCAAAATTCAGCTTTTCAAGAAAGTGCAATGCAAGAGGGACCCTTTAATGGAGAGTATCATCATAGTAATGTGATGTTCAATTCACATGTTAAATTTCCAAATCAAATGGTGGAAAATGGGTTTGTCCATTGTATACCTGAGGTTGATTTAAGTAATAATTTCAATCTAAGCAATGATGCAATGTATGCATGA 795 0.366 MGFQQLEKTKPKHRKGLWSPEEDHNLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHILGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKVAKAMEIESHKQIHHHASSSSDTLNSSLSLQNHATQDPQNYNIAKEIHQSSLPKLLFAEWLSLDQVNGRNSTNSLDSLVMKNGFDQNSAFQESAMQEGPFNGEYHHSNVMFNSHVKFPNQMVENGFVHCIPEVDLSNNFNLSNDAMYA* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0732 264 Gene3D - 70 143 - -
Tpr1g0732 264 CDD SANT 18 62 IPR001005 -
Tpr1g0732 264 PANTHER MYB TRANSCRIPTION FACTOR 1 155 - -
Tpr1g0732 264 PANTHER MYB TRANSCRIPTION FACTOR 155 257 - -
Tpr1g0732 264 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Tpr1g0732 264 SMART sant 14 64 IPR001005 -
Tpr1g0732 264 SMART sant 67 115 IPR001005 -
Tpr1g0732 264 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Tpr1g0732 264 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Tpr1g0732 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tpr1g0732 264 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Tpr1g0732 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Tpr1g0732 264 Gene3D - 15 67 - -
Tpr1g0732 264 PANTHER MYB DOMAIN PROTEIN 55 1 155 - -
Tpr1g0732 264 PANTHER MYB DOMAIN PROTEIN 55 155 257 - -
Tpr1g0732 264 CDD SANT 70 113 IPR001005 -
Tpr1g0732 264 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0732 Tpr-Chr1 6202640 6205117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0732 7 178 MYB Transcription Factor Family AT5G52260 55.319 4.05e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g0732 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0732 K09422 - gmx:778167 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0732 1 6202640 6205117 Tpr1g0732 1 6202640 6205117 ECH