LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g0726	ATGGTTAACTCCATAACACACTTCAATTTCAATCTCATCATCTTCTTCTTCCTCCTTCTTGTTAGCAATGATACTGCAGAAGCACAATCAACAATAATGCAACCATCATCACCAACAATCTTATGGGACGTGTCTTCTATCGTGGTAATTGTCGTAGCAATCATTATCACACTCATCTTAATTTTCATCTTCTCATTGTTTCTGCGCCGCGCCACTAATCCATCAATGGAAGAGTTATCAAAGCGCGAACTTGGCATTGGTATCAACCCTCAAATTCTAAAAAGTTTTCCAATTTTATTATACTCTTCCATCATCAACAATCTTAAGGAAAGTGAAGATCCTCTACAATGTGCTGTTTGTCTTGCTGATTTCAACAACAATGATACAATTCGTGTGTTACCTCAATGTAACCATATTTTTCATCCTCCTTGTATTGATGCTTGGCTTTCTAACCATGCTACTTGTCCTGTTTGCCGTACCAATCTCAATCATCAATGTTCATGTCATTTGGCAATTTCTATCGACACACAAGTCAACGGTGAACGTGGAAATGAAAGCGTGTAA	564	0.3777	MVNSITHFNFNLIIFFFLLLVSNDTAEAQSTIMQPSSPTILWDVSSIVVIVVAIIITLILIFIFSLFLRRATNPSMEELSKRELGIGINPQILKSFPILLYSSIINNLKESEDPLQCAVCLADFNNNDTIRVLPQCNHIFHPPCIDAWLSNHATCPVCRTNLNHQCSCHLAISIDTQVNGERGNESV*	188

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g0726	187	SMART	ring_2	117	158	IPR001841	-
	Tpr1g0726	187	ProSiteProfiles	Zinc finger RING-type profile.	117	159	IPR001841	-
	Tpr1g0726	187	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL6	14	167	-	-
	Tpr1g0726	187	CDD	RING-H2_PA-TM-RING	116	159	-	-
	Tpr1g0726	187	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	79	165	IPR013083	-
	Tpr1g0726	187	PANTHER	RING FINGER DOMAIN-CONTAINING	14	167	-	-
	Tpr1g0726	187	Pfam	Ring finger domain	116	159	IPR001841	-
	Tpr1g0726	187	SUPERFAMILY	RING/U-box	99	165	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g0726	Tpr-Chr1	6154358	6154921	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g0726	2	167	Rapid Response to Elicitors	AT3G05200	35.754	4.44e-31	114

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g0726	K10664		-	aprc:113871817	129.028

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