Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0726 ATGGTTAACTCCATAACACACTTCAATTTCAATCTCATCATCTTCTTCTTCCTCCTTCTTGTTAGCAATGATACTGCAGAAGCACAATCAACAATAATGCAACCATCATCACCAACAATCTTATGGGACGTGTCTTCTATCGTGGTAATTGTCGTAGCAATCATTATCACACTCATCTTAATTTTCATCTTCTCATTGTTTCTGCGCCGCGCCACTAATCCATCAATGGAAGAGTTATCAAAGCGCGAACTTGGCATTGGTATCAACCCTCAAATTCTAAAAAGTTTTCCAATTTTATTATACTCTTCCATCATCAACAATCTTAAGGAAAGTGAAGATCCTCTACAATGTGCTGTTTGTCTTGCTGATTTCAACAACAATGATACAATTCGTGTGTTACCTCAATGTAACCATATTTTTCATCCTCCTTGTATTGATGCTTGGCTTTCTAACCATGCTACTTGTCCTGTTTGCCGTACCAATCTCAATCATCAATGTTCATGTCATTTGGCAATTTCTATCGACACACAAGTCAACGGTGAACGTGGAAATGAAAGCGTGTAA 564 0.3777 MVNSITHFNFNLIIFFFLLLVSNDTAEAQSTIMQPSSPTILWDVSSIVVIVVAIIITLILIFIFSLFLRRATNPSMEELSKRELGIGINPQILKSFPILLYSSIINNLKESEDPLQCAVCLADFNNNDTIRVLPQCNHIFHPPCIDAWLSNHATCPVCRTNLNHQCSCHLAISIDTQVNGERGNESV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0726 187 SMART ring_2 117 158 IPR001841 -
Tpr1g0726 187 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Tpr1g0726 187 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 14 167 - -
Tpr1g0726 187 CDD RING-H2_PA-TM-RING 116 159 - -
Tpr1g0726 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 165 IPR013083 -
Tpr1g0726 187 PANTHER RING FINGER DOMAIN-CONTAINING 14 167 - -
Tpr1g0726 187 Pfam Ring finger domain 116 159 IPR001841 -
Tpr1g0726 187 SUPERFAMILY RING/U-box 99 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0726 Tpr-Chr1 6154358 6154921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0726 2 167 Rapid Response to Elicitors AT3G05200 35.754 4.44e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0726 K10664 - aprc:113871817 129.028