Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0721 ATGGCTCCGTCGGCGGAACACAACACCAATTCCTCCACTCCCACGCCATTTCTCACCAAAACATACCATCTCGTTGATGACCGCGCCATCAACGACGTGATTTCATGGAACGATACTGGAACTTCCTTCATCGTTTGGAATCCTACCGTTTTCGCTAGAGATTTGCTTCCCAAATATTTCAAACATAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACTTATGGATTTAAAAAAGTTGCACCTGATCGGTGGGAATTCTCTAACGAATGTTTCCGAAGAGGTCAGAAACGTCTTCTCTCTGATATTCAGAGACGGAAAATCGTTTCAGCATCGCCGGCGGTGGCTTCAAATGCAACGACAGCTGTTCCGACGGCGAAGACGATTGTGTCACCGTCAATCTCAGGGGATGAGCAGGTTATTTCTTCGAATTCTTCGCCGTCGATTGCGCCGGCGGAGATTTTGGATGAGAACCAGAGGCTGAGAAAAGAGAATATGCAGTTAACGAAGGAAATAGAGGACATAAAATCGCTCTACAACAATATATTCAATCTTTTGTCAAATTATGTCAAATCTCAAGGAAAAGAGTGTTGTTCGACGCTTCATTTGTTACCGGATAATCGGTGCGACGGAGAAGATGCAGCTACGATGGCAGTGGAGGAAATAAACCCGAAACTGTTTGGGGTGACGCTAGGTACGAAACGAGGGAGAGAAGAAGGACGGTGTATTGAGGATAATACGGTGTTGAGCCTGCATCAACCAGTTCATGCGGATATGAAAGCAGGACCATTGGATTCAATTAATAGTGGAAAGAGGAAAAAATTGTGGCTAAATCGGTGCTATAGAGAGAATCAGAGTGTATGTAATTGA 870 0.4471 MAPSAEHNTNSSTPTPFLTKTYHLVDDRAINDVISWNDTGTSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVAPDRWEFSNECFRRGQKRLLSDIQRRKIVSASPAVASNATTAVPTAKTIVSPSISGDEQVISSNSSPSIAPAEILDENQRLRKENMQLTKEIEDIKSLYNNIFNLLSNYVKSQGKECCSTLHLLPDNRCDGEDAATMAVEEINPKLFGVTLGTKRGREEGRCIEDNTVLSLHQPVHADMKAGPLDSINSGKRKKLWLNRCYRENQSVCN* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0721 289 SUPERFAMILY "Winged helix" DNA-binding domain 13 106 IPR036390 -
Tpr1g0721 289 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g0721 289 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g0721 289 Gene3D - 9 107 IPR036388 -
Tpr1g0721 289 Coils Coil 158 178 - -
Tpr1g0721 289 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g0721 289 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g0721 289 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g0721 289 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g0721 289 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 6 271 - -
Tpr1g0721 289 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 271 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0721 Tpr-Chr1 6131407 6132642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0721 4 289 HSF AT5G62020 44.337 9.19e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tpr1g0721 HSF_DNA-bind 1.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0721 K09419 - gmx:100780987 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0721 1 6131407 6132642 Tpr1g0721 1 6131407 6132642 ECH
Tpr2g4356 2 47364012 47365690 Tpr1g0721 1 6131407 6132642 PCT