Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0720 ATGGCTTCTTCTTTCAACATTCTAGTATTCTCGTACCTTGTCGTTTTCAATTTCCAACTAAGTTACGCCATTAAAGACAAAAATGACCAAAACCCAGATAAACTTTCCCTTCTTTCTTTCAAAGGGTCTCTTCAAAATTCTCACTTTCTTTCTTCATGGCACCGTTCAACTCCTCACTGTAACTGGGTTGGTGTTACATGTCAACTCGGACGAGTCACTGAACTCCAACTTCCTTCTCTTTACCTCAGAAGTAACCTCTCTGTGTCTCTTTCGTCTCTGTCCTCTCTCTCGTCTCTCACTATACTCAACCTCGAGGATAATCAATTCTCCGGCGAAATTCCCGGTGAACTTGGTGGCTTGTTTCAGCTAGGAACACTTGACCTCTCCGGCAATGCACTCACTGGAGAAATACCGGAGAGTTTTGGAAACTTGACAAGACTTCAGTTTCTTGACCTTAGCAACAATTTTTTCTCAGGTTCTCTTCCGATTACTCTCTTCACCGGAACACTCTCTTTGATTTCTGTTGATATTTCAAACAACTCGTTTTCCGGCGAGCTTCCGGCGGAAATTGGAAACTGGAAGAACCTCACTGCACTTTACATTGGGTTAAACAAGTTGTCTGGTACATTGCCTAAGGAAATTGGTAAGCTTTCGAGGCTAGAAATTTTGTATTCACCTTCTTGTTTGATCGAAGGTCCATTACCTGAAGAAATGGAAAACCTTGAATCGTTGACTAAACTTGACCTTTCTTATAACCCTTTGAGATGTTCAATTCCAAAGTTTATAGGGAAGTTGAAAAAATTGAAAATTTTGAACCTTGTTTTTTCTGAGCTTAATGGGTCAATTCCACCTGAGTTAGGAAATTGTTCAAATTTAACTTCTGTGATGCTTTCTTTCAATTCTCTTTCTGGTTCACTTCCTCAAGAGCTTTCTCAGCTTCCTATAAAAACATTTTCAGCTGAAAAGAATCTTCTTCAGGGAGCTTTGCCTTCTTGGCTTGGAAAATGGGCTAATGTTGATTCTCTGTTGCTTTCTGCTAACCGTTTTTCTGGTGTGATTCCACCTGAGCTTGGGAATTGTTCTGTGATGGAGCATCTCAGTTTGACTAGTAACTTGTTGACAGGTTCTATACCTGAGGAGCTTTGTAATGCTGCTTCACTTTTGGAGATTGATCTTGATGATAACTACCTTAGTGGTACAATTGAGAAGGCTTTCGTTAATTGTAAGAATCTTACTCAATTGGGTTTGATGAACAATAAGATTGTTGGTTCTATCCCTAATTACCTTTCTGAGCTTCCTTTGATGGTGTTGGACTTGGATAACAACAATTTTAGTGGACAGATACCTTCTAGTTTGTGGAATTCATCAACCCTGATGGAATTTTCTGCCTCTAATAACCACTTAGAGGGTTCTCTACCTATGGAGATTGGGAATGCAGTTATTCTGCAAAGGCTTGTTCTTAGCAACAATCGTTTGATAGGTACTATTCCTAAGGAAATTGGAAGTCTTTTGAGTCTCTCAGTTTTTAATTTGAATGGAAACATGCTTGAAGGAAACATTCCGAGTGAGCTTGGTGATTGCATTTCACTCACTACATTGGACCTTGGAAACAATCAGCTCAATGGCTCTATTCCTGAGAAATTGGTGAAACTAAGTCAATTACAGTGCCTAGTTCTTTCTCACAATAATCTCTCGGGCTCTATACCTGCCAAAGAATCTTCCTATTTTCGACAGCTTACCGTTCCTGATTTAAGTTTTGTTCAACACATTGGTGTGTTGGATCTTTCGCACAATCAATTGTCCGGCACCATCCCTGACGAATTAGGAAACTGTGTAATGGTTGTTGATCTGTTGCTAAGCAACAACTTACTTTCTGGTAGCATTCCAAGATCATTCTCGCGATTGACAAATCTAACAACTTTAGATTTGTCTGGAAACTTGTTGTCAGGTACCATTCCACTTGAGCTTGGAGATGCTGTAACACTCCAAGGTTTATATTTGGGACAGAATCAACTCTCCGGTACAATCCCTGAAAATTTTGGAAAGTTGACTCGTTTGGTGAAGCTGAATTTGACAGGAAATATGCTGCATGGTCCAATTCCAATCAGTTTTGGGAACATGAAGGAATTGACTCACTTGGACTTGAGCTATAATGAGCTAATTGGTGAGCTTCCATCCATTATGTCGGGTGTGCAAAGTCTAGTTGGTCTTTATGTGCAGAATAACAGGCTTTCAGGCCATGTCGGCGAGCTTTTCTCAAACTCCATGACATGGAGGATTGAGACAATGAATTTAAGTTGCAATTTCTTCGACGGGAACTTGCCATGGTCTTTGGGAAATCTTTCCTACTTAACAATTTTGGATCTTCACAGAAATCTGTTGACCGGAGAGATTCCTTTAGACCTAGGGAATCTAATGCAACTTGAGTATTTTGATGTTTCAGGTAATCAATTATCCGGAAAAATTCCAGAGAAGCTATGCAGCCTAGTTAATTTGAACTACCTAGATTTGTCTCAAAACAGATTGGAAGGGCCTATTCCTAGAACTGGTATTTGCCAAAACCTATCAAGAGTTAGATTTTTGGGAAACAGGAACCTTTGTGGCCAGATGTTGGGAACAAATTGTGAGGTCAAAAGCATCGGTAGATATACATTGTTTAATGCATGGAGGCTTGGTGCAATTGCAATCACAGTCATACTAATAACCTTGATCTTTGCTTTTCTTCTGCATAGATGGATTAGCAGAAAGCAAAATGATCCTGAGGAACTCGAGGATCGGAAACTGCACAGTTATGTGGATCAAAATCTTTACTTCCTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAATGTAGCAATGTTTGAGCAGCCTCTTCTGAAGTTAACCTTGGTTGATATCCTTGAAGCTACAGACAATTTCAGCAAGACAAACATAATCGGAGACGGAGGTTTCGGAACTGTGTACAGGGCCACTTTACCAAATGGAAGAACGGTTGCTGTGAAGAAGCTTAGTGAAGCTAAAACGCAGGGTCATCGTGAGTTCATGGCTGAAATGGAAACCTTGGGAAAGGTAAAGCATCAAAACCTAGTTGCATTGCTTGGTTATTGCTCAATGGGTGAGGAGAAACTCCTTGTTTATGAATACATGGTAAATGGAAGCTTAGACCTTTGGTTGAGAAACAGGACCGGGGGACTCGAAATCCTCGACTGGAACAAACGTTACAAAATCGCGACTGGTGCAGCAAAAGGATTAACTTTCCTCCATCAGGGTTTTATACCTCACATCATTCATAGGGATGTTAAAGCTAGCAACATTTTACTAAATGAAGATTTTGAGCCAAAAGTTGCTGATTTTGGACTAGCAAGATTGATCAGTGCATGTGAGACTCATATCACAACTGATATTGCTGGAACATTGGGTTACATTCCACCAGAGTATGGACAGAGTGGAAGATCAACAACACGAGGTGATGTCTATAGTTTCGGTGTCATTTTACTTGAATTGGTGACCGGGAAAGAGCCGACAGGACCAGATTTCAAAGAGATTGAAGGTGGAAACTTGGTTGGATGGGTTGGTCAGAAGATCAAGAAAGGACAGGCTGCTGAAGTCCTCGATCCTACAGTTCTCGATGCGGATTCTAAGCAGATGATGCTTCAAATGCTTCAGATTGCTTGTGTCTGTCTCTCTGATAATCCTGCAAACAGGCCTACCATGTCTCAAGTGCACAAATTCTTGAAGGGGATGAAAGGTGGTATCAGAATTAACTAG 3771 0.406 MASSFNILVFSYLVVFNFQLSYAIKDKNDQNPDKLSLLSFKGSLQNSHFLSSWHRSTPHCNWVGVTCQLGRVTELQLPSLYLRSNLSVSLSSLSSLSSLTILNLEDNQFSGEIPGELGGLFQLGTLDLSGNALTGEIPESFGNLTRLQFLDLSNNFFSGSLPITLFTGTLSLISVDISNNSFSGELPAEIGNWKNLTALYIGLNKLSGTLPKEIGKLSRLEILYSPSCLIEGPLPEEMENLESLTKLDLSYNPLRCSIPKFIGKLKKLKILNLVFSELNGSIPPELGNCSNLTSVMLSFNSLSGSLPQELSQLPIKTFSAEKNLLQGALPSWLGKWANVDSLLLSANRFSGVIPPELGNCSVMEHLSLTSNLLTGSIPEELCNAASLLEIDLDDNYLSGTIEKAFVNCKNLTQLGLMNNKIVGSIPNYLSELPLMVLDLDNNNFSGQIPSSLWNSSTLMEFSASNNHLEGSLPMEIGNAVILQRLVLSNNRLIGTIPKEIGSLLSLSVFNLNGNMLEGNIPSELGDCISLTTLDLGNNQLNGSIPEKLVKLSQLQCLVLSHNNLSGSIPAKESSYFRQLTVPDLSFVQHIGVLDLSHNQLSGTIPDELGNCVMVVDLLLSNNLLSGSIPRSFSRLTNLTTLDLSGNLLSGTIPLELGDAVTLQGLYLGQNQLSGTIPENFGKLTRLVKLNLTGNMLHGPIPISFGNMKELTHLDLSYNELIGELPSIMSGVQSLVGLYVQNNRLSGHVGELFSNSMTWRIETMNLSCNFFDGNLPWSLGNLSYLTILDLHRNLLTGEIPLDLGNLMQLEYFDVSGNQLSGKIPEKLCSLVNLNYLDLSQNRLEGPIPRTGICQNLSRVRFLGNRNLCGQMLGTNCEVKSIGRYTLFNAWRLGAIAITVILITLIFAFLLHRWISRKQNDPEELEDRKLHSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKTNIIGDGGFGTVYRATLPNGRTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVALLGYCSMGEEKLLVYEYMVNGSLDLWLRNRTGGLEILDWNKRYKIATGAAKGLTFLHQGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTLGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVGQKIKKGQAAEVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMSQVHKFLKGMKGGIRIN* 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0720 1256 Pfam Protein tyrosine and serine/threonine kinase 977 1246 IPR001245 GO:0004672|GO:0006468
Tpr1g0720 1256 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Tpr1g0720 1256 Gene3D Ribonuclease Inhibitor 30 231 IPR032675 -
Tpr1g0720 1256 Gene3D Transferase(Phosphotransferase) domain 1 1050 1251 - -
Tpr1g0720 1256 SMART serkin_6 974 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0720 1256 Gene3D Ribonuclease Inhibitor 577 878 IPR032675 -
Tpr1g0720 1256 ProSiteProfiles Protein kinase domain profile. 974 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0720 1256 SUPERFAMILY L domain-like 33 314 - -
Tpr1g0720 1256 PRINTS Leucine-rich repeat signature 638 651 - -
Tpr1g0720 1256 PRINTS Leucine-rich repeat signature 829 842 - -
Tpr1g0720 1256 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515
Tpr1g0720 1256 SUPERFAMILY Protein kinase-like (PK-like) 955 1246 IPR011009 -
Tpr1g0720 1256 Gene3D Ribonuclease Inhibitor 232 315 IPR032675 -
Tpr1g0720 1256 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 761 1250 - -
Tpr1g0720 1256 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 97 335 - -
Tpr1g0720 1256 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 316 751 - -
Tpr1g0720 1256 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 13 101 - -
Tpr1g0720 1256 SUPERFAMILY L domain-like 576 868 - -
Tpr1g0720 1256 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1096 1108 IPR008271 GO:0004672|GO:0006468
Tpr1g0720 1256 Gene3D Ribonuclease Inhibitor 316 576 IPR032675 -
Tpr1g0720 1256 SUPERFAMILY L domain-like 319 585 - -
Tpr1g0720 1256 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 97 335 - -
Tpr1g0720 1256 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 13 101 - -
Tpr1g0720 1256 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 761 1250 - -
Tpr1g0720 1256 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 316 751 - -
Tpr1g0720 1256 SMART LRR_sd22_2 635 656 - -
Tpr1g0720 1256 SMART LRR_sd22_2 707 733 - -
Tpr1g0720 1256 SMART LRR_sd22_2 829 857 - -
Tpr1g0720 1256 ProSitePatterns Protein kinases ATP-binding region signature. 980 1003 IPR017441 GO:0005524
Tpr1g0720 1256 Gene3D Phosphorylase Kinase; domain 1 936 1049 - -
Tpr1g0720 1256 SMART LRR_typ_2 144 168 IPR003591 -
Tpr1g0720 1256 SMART LRR_typ_2 781 805 IPR003591 -
Tpr1g0720 1256 SMART LRR_typ_2 635 659 IPR003591 -
Tpr1g0720 1256 SMART LRR_typ_2 96 119 IPR003591 -
Tpr1g0720 1256 SMART LRR_typ_2 551 575 IPR003591 -
Tpr1g0720 1256 SMART LRR_typ_2 587 611 IPR003591 -
Tpr1g0720 1256 SMART LRR_typ_2 503 527 IPR003591 -
Tpr1g0720 1256 SMART LRR_typ_2 829 854 IPR003591 -
Tpr1g0720 1256 SMART LRR_typ_2 241 265 IPR003591 -
Tpr1g0720 1256 SMART LRR_typ_2 120 143 IPR003591 -
Tpr1g0720 1256 SMART LRR_typ_2 707 731 IPR003591 -
Tpr1g0720 1256 CDD STKc_IRAK 980 1249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0720 Tpr-Chr1 6122321 6127244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0720 29 1247 Receptor kinase-like Gene Family AT5G07280 59.755 0.0 1398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Tpr1g0720 PK_Tyr_Ser-Thr 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0720 - - gmx:100780446 2008.03