Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0705 ATGAAGGCTATTTTCTGTGGAAATTTCGAATATGATTGCCGGGAGTCTGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGGCTGGATTTGCTTTTATCTATATGGAAGATGAGAGAGATGCTGATGCTGCAATTCGCGCTCTTGATCGGATAGAGTTTGGTCGAAAGGGGCGCAGACTTCGTGTAGAATGGACAAAGGGAGAGCGTGGCATTCGAAGGCCTGCTGAGCGTCCAAAAAGATCTTCAGCTAATGTAAGACCATCAAAGACCTTATTTGTAATTAATTTTGATACATACCAGACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGAAGAAATTTTGCATTTGTTCAGTATGATTCAGAAGATGATGCTTCCAAAGCACTGGAAGCTACAAATAATAGCAAGTTGTTGGATCGGGTTATTTCAGTTGAATTTTCTTCTAAAGACGATGACGCTAGGAGAAATGGACATAGCCCGGATAGGGGCCGTGATCGTCAACGTGACAGAAGCCGTGATGGAAGGCGATCACCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCACGGGCCTAGTCCATATAAGAGAGAGAGGAGCAGCCCTGACTATGGGCGTGGCAACAGCCGTAGTAGAAGCCCCCCCTATAAGAGGGAGAGGAGTAGCCCTGCTTATGGGCGTCGAAGCGTTAGTCCTTACAGAAGAGAGAGGGATGGTTCTGAGCCTGTTCGTGGCACTAGCCCCAGTCCTTATCACAAAGAGCGTGGGAGAACTGGCCGGTCTCCCTCTCAGAGTCCCGAAGAAGGAGAGAGGATAGACCTTCGAAATGATCATGGATCTGAGCATAGTCCTTATGACACTGTGAAGGATAGCCCTGAAAATGGCCATCACCGGAGGCATAGTCCTGATGCAATAGGGAACCCCAGCCCATACAATGATTCTAGAAGAAGCCCTAGTCCTGATGCAAAAGGGAACCCCAGTCCATACAATGATTATGGAGGGAGCCCAAATACTGTGCCTGAACCCAGGGACAGTCCCAACTATGGTGGTGCTGAAAGTCCCATGCAGGAGCAATATCGCAGCCAGAGCCGGTCACCCCCTGCAGAAGAATGA 1173 0.4851 MKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDADAAIRALDRIEFGRKGRRLRVEWTKGERGIRRPAERPKRSSANVRPSKTLFVINFDTYQTRTRDLERHFEPYGKIVSVRIRRNFAFVQYDSEDDASKALEATNNSKLLDRVISVEFSSKDDDARRNGHSPDRGRDRQRDRSRDGRRSPSPYRRERGSPDYGHGPSPYKRERSSPDYGRGNSRSRSPPYKRERSSPAYGRRSVSPYRRERDGSEPVRGTSPSPYHKERGRTGRSPSQSPEEGERIDLRNDHGSEHSPYDTVKDSPENGHHRRHSPDAIGNPSPYNDSRRSPSPDAKGNPSPYNDYGGSPNTVPEPRDSPNYGGAESPMQEQYRSQSRSPPAEE* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0705 390 MobiDBLite consensus disorder prediction 327 354 - -
Tpr1g0705 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Tpr1g0705 390 MobiDBLite consensus disorder prediction 371 385 - -
Tpr1g0705 390 PANTHER BNAC08G47240D PROTEIN 4 211 - -
Tpr1g0705 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Tpr1g0705 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Tpr1g0705 390 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 211 - -
Tpr1g0705 390 Gene3D - 1 85 IPR012677 -
Tpr1g0705 390 Gene3D - 86 179 IPR012677 -
Tpr1g0705 390 MobiDBLite consensus disorder prediction 167 225 - -
Tpr1g0705 390 MobiDBLite consensus disorder prediction 232 323 - -
Tpr1g0705 390 MobiDBLite consensus disorder prediction 167 390 - -
Tpr1g0705 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Tpr1g0705 390 SUPERFAMILY RNA-binding domain, RBD 3 169 IPR035979 GO:0003676
Tpr1g0705 390 SMART rrm1_1 3 70 IPR000504 GO:0003723
Tpr1g0705 390 SMART rrm1_1 97 163 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0705 Tpr-Chr1 5981115 5985062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0705 4 170 Eukaryotic Initiation Factors Gene Family AT1G49760 22.222 2.10e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0705 K12893 - gmx:100796509 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0705 1 5981115 5985062 Tpr1g0705 1 5981115 5985062 ECH