Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0703 ATGGATGGCAACAACAACAGCAACGTTTCTGCAGTTCCACCAGCACCACCACCTATACAAATTCCTAATGCAGTCACTTCTTCATCTACATCTGCACCAACAACTCCTTCATCTCCGGCAACAACAGGAGTCCTCGGGGTACGATACCGAGGAACGCGTTGCCGGAGTGGAAAATGGGTATCTGAAATACGTGAACCACGTAAAACAAAACGCATTTGGTTAGGAACATACCCTACAGCTGAAATGGCTGCAGCTGCTTATGATGTTGCTGCTCTTGCTTTAAAAGGACCTGAAACAACTCTTAACTTTCCTGATTCAATTCCTTCTTACCCTATTCCTGCTTCATTATCTTCAACTGATATTCGTGCTGCTGCTGAAGCTGCTGCACAAACCAGAATCATCAAACCGATGATTAGTCCTAAACAAGAACAACAACAACAACAACAACAGAACCCTTCATCTTCTGGTTTTGAAGGATCTTCTTCTTCAGCAGCAGCTAGTGGAGTACCACAAGAATATATTGATGAGGATGAGTTGTTGAATATGCCAAATTTGTTGGATGAAATGGCTATAGGAATGCAGGTTAGTCCACCAAGGATGAGTTCATTTTCTAATTATTCTTCCGATGATTCACCTCGCAATTCTGATCATGGTGGAGATAATCTTTGGAGTTACCATTTTTGA 684 0.4225 MDGNNNSNVSAVPPAPPPIQIPNAVTSSSTSAPTTPSSPATTGVLGVRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPTAEMAAAAYDVAALALKGPETTLNFPDSIPSYPIPASLSSTDIRAAAEAAAQTRIIKPMISPKQEQQQQQQQNPSSSGFEGSSSSAAASGVPQEYIDEDELLNMPNLLDEMAIGMQVSPPRMSSFSNYSSDDSPRNSDHGGDNLWSYHF* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0703 227 Gene3D AP2/ERF domain 45 105 IPR036955 GO:0003700|GO:0006355
Tpr1g0703 227 MobiDBLite consensus disorder prediction 201 227 - -
Tpr1g0703 227 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Tpr1g0703 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 45 225 - -
Tpr1g0703 227 MobiDBLite consensus disorder prediction 139 169 - -
Tpr1g0703 227 ProSiteProfiles AP2/ERF domain profile. 43 104 IPR001471 GO:0003700|GO:0006355
Tpr1g0703 227 MobiDBLite consensus disorder prediction 22 42 - -
Tpr1g0703 227 MobiDBLite consensus disorder prediction 1 45 - -
Tpr1g0703 227 MobiDBLite consensus disorder prediction 139 168 - -
Tpr1g0703 227 CDD AP2 48 106 IPR001471 GO:0003700|GO:0006355
Tpr1g0703 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 45 225 - -
Tpr1g0703 227 SMART rav1_2 48 110 IPR001471 GO:0003700|GO:0006355
Tpr1g0703 227 Pfam AP2 domain 44 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0703 Tpr-Chr1 5964446 5965875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0703 42 225 AP2-EREBP Transcription Factor Family AT5G52020 53.226 2.94e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g0703 AP2 4.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0703 - - mtr:MTR_1g101550 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0703 1 5964446 5965875 Tpr2g4198 2 44878109 44881869 ECH
Tpr1g0703 1 5964446 5965875 Tpr1g0703 1 5964446 5965875 ECH