Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0702 ATGTTTACTATGAATCATATATCGGAGTCACATGTTCCATGTTCATCTTCAGAGAGGTTTCTTGCTGAAACTATGCCAAAGAAACCTGCAGGGAGGAAGAAGTTCAGGGAAACCCGCCACCCTGTATACCGTGGTGTCAGAAAGAGAGATTCCGGCAAGTGGGTTTGTGAAGTAAGAGAACCTAACAAGAAAACCAGAATTTGGCTTGGGACATTTCCTACTCCCGAGATGGCGGCGCGTGCACACGACGTTGCTGCGATTGCGCTTAGAGGAAATTCTGCTTGTCTTAACTTTGCTGACTCTACTTGGAGGTTGCCGGTTCCTGCCACAGCGGATGCAAGGGATATTCAAAAAGCGGCGGCTGAGGCAGCGGAGAAGTTCAGGCCGGAGACTGAGTTTGAGAACAGTGAGGAGAGGAAGGTTTGTGAGAGTTCAACGACGGTGGCGGTGGCGGAGCCAGAGGAAGAAGAACACACAGTGCCGGAGTATTTAAGAAACATGGTACTAATGTCACCGGCACATTATTGGGGGAGTGAATGTGAATATGATATTGCTGACGTGGAATTTGGTGGTGATACTGATACTGAAGTTTCATTGTGGAGTTTTTCAATTTAA 615 0.4748 MFTMNHISESHVPCSSSERFLAETMPKKPAGRKKFRETRHPVYRGVRKRDSGKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAAIALRGNSACLNFADSTWRLPVPATADARDIQKAAAEAAEKFRPETEFENSEERKVCESSTTVAVAEPEEEEHTVPEYLRNMVLMSPAHYWGSECEYDIADVEFGGDTDTEVSLWSFSI* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0702 204 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Tpr1g0702 204 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677
Tpr1g0702 204 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 9 204 - -
Tpr1g0702 204 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 204 IPR045277 GO:0003700
Tpr1g0702 204 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Tpr1g0702 204 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Tpr1g0702 204 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Tpr1g0702 204 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Tpr1g0702 204 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Tpr1g0702 204 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0702 Tpr-Chr1 5952060 5953679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0702 8 202 AP2-EREBP Transcription Factor Family AT4G25470 51.643 1.90e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g0702 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0702 - K09286 aprc:113872706 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4204 2 44987391 44990159 Tpr1g0702 1 5952060 5953679 PCT