Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0690 ATGTTTCCCTATCAGGATATAACGCCGAAAAAGGTAACCAATATATATTTATATATACTTCGGTCGTTTTCTGCAGTTGAAGCCAGAGAGAGAGAGAGAGAGAGAGAAAAAAAAGAATCTAGGATGGGAAGAGGGAAGGTGGTTCTTGAGAGAATACAGAACAAAATCAACAGACAAGTAACATTCTCAAAGAGAAGGAGTGGTTTGCTGAAGAAAGCATTCGAACTTTCTGTGTTATGTGATGCTGAAGTTGCTCTTATCATCTTTTCCAGCCTTGGCAAGCTTTTTCAATACAGTACCACTGACTTGAACAAAATCATTGAGAAGTATCGACAATGTTGCTTTAATAATATGTCTGAGAATAACGACTTGGGAGAACAAGAGTCACAGAGCTTACACCAGGAGCTTTTGATGCTAAGAGTCAAGCATGAATCTCTAGCTCGGACTCAAAGGATATTTTTGGGAGAAGAACTCAATGCACTTGGCATAAAAGATTTGCAGAGTATAGAGAAACAACTGGAGAGAACACTTGCACAAGCTCGAAAGCACCAAATGCAAAAGATGATGGCAAGAGTTGATCAATTACGTGAGGAGGTGCACAAGGTGGAGGAGGTCAACAAACAATTAAAATCCCAGAAAAGAGGTATAAGCACCAATATTTGTGACAATTCGACTAATTCGACCATCTCCAGTAATAACAATATCATCGCCAATTTACTTGATGCACAAGCCAATCAGTTTGATTATGGAACAACAAGCCGGTTTGGGCACCAACAAGGTGCATCAAAAGACCAAGCGAGCATCGACATTGATAGAGGACAAAGCAGTCACAACAAGAACAATGGATGGATGCATATTTGA 861 0.3972 MFPYQDITPKKVTNIYLYILRSFSAVEAREREREREKKESRMGRGKVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSLGKLFQYSTTDLNKIIEKYRQCCFNNMSENNDLGEQESQSLHQELLMLRVKHESLARTQRIFLGEELNALGIKDLQSIEKQLERTLAQARKHQMQKMMARVDQLREEVHKVEEVNKQLKSQKRGISTNICDNSTNSTISSNNNIIANLLDAQANQFDYGTTSRFGHQQGASKDQASIDIDRGQSSHNKNNGWMHI* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0690 286 PRINTS MADS domain signature 44 64 IPR002100 GO:0003677|GO:0046983
Tpr1g0690 286 PRINTS MADS domain signature 64 79 IPR002100 GO:0003677|GO:0046983
Tpr1g0690 286 PRINTS MADS domain signature 79 100 IPR002100 GO:0003677|GO:0046983
Tpr1g0690 286 CDD MADS_MEF2_like 43 113 IPR033896 GO:0000977|GO:0045944
Tpr1g0690 286 ProSiteProfiles MADS-box domain profile. 42 102 IPR002100 GO:0003677|GO:0046983
Tpr1g0690 286 PANTHER MADS-BOX TRANSCRIPTION FACTOR 42 229 - -
Tpr1g0690 286 SMART madsneu2 42 101 IPR002100 GO:0003677|GO:0046983
Tpr1g0690 286 ProSitePatterns MADS-box domain signature. 44 98 IPR002100 GO:0003677|GO:0046983
Tpr1g0690 286 PANTHER MADS BOX PROTEIN 42 229 - -
Tpr1g0690 286 SUPERFAMILY SRF-like 43 119 IPR036879 GO:0003677|GO:0046983
Tpr1g0690 286 Gene3D - 54 135 IPR036879 GO:0003677|GO:0046983
Tpr1g0690 286 MobiDBLite consensus disorder prediction 255 286 - -
Tpr1g0690 286 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 51 98 IPR002100 GO:0003677|GO:0046983
Tpr1g0690 286 Pfam K-box region 126 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr1g0690 286 ProSiteProfiles K-box domain profile. 129 219 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr1g0690 286 Coils Coil 163 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0690 Tpr-Chr1 5861279 5865269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0690 42 259 MADS-box Gene Family AT2G45650 45.133 4.86e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr1g0690 K-box 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0690 K09264 - gmx:100802197 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0690 1 5861279 5865269 Tpr1g0690 1 5861279 5865269 ECH