Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0683 ATGGCTGAAGAAAATCAGCATAAAATATTGGTTCCTTCAGACAATGATGAGAAGAAGATTATTCGTAGGGAAGTTGAAAAACAAAGAAGGATGCAAATGTCTATTCTATGTTCATCACTCCGTTCTTCACTCCCTTCTGACCTCATCAAGGGAAAGCGTTCAGTATCAGATCACATAGCTGCGGCTGCAAATTATGTCCAGTTTTTGAAGCAAAAAACGAATGAACTTGAAACAAAGAGGGATAGCCTCAAAGAAATGGCTAGTTCAAGTATGGTTGAGATTGGAAATGAATTATCATCAGATCCTTCAAGATTAGTGAAGTGTGTCAAGATTAATATCATTCAAGGTGGTGTAGAAATTGTAATATGTAGTGGTTTCGAGGATTTCAGTTCACGTTTATCGGATTTATTGAAAATAATACTTGAAGAAGGATGTGATGTTGTTCATTGTGTTACCAACCAAGTAAATGGGAAGATTTTTCATACTATTAAATCTGAGGTAAAGGACTTGACATGCCTTAACCTTGCTCGGCTGCAAAACAAACTGGATCATGCAATCTTATAG 564 0.3635 MAEENQHKILVPSDNDEKKIIRREVEKQRRMQMSILCSSLRSSLPSDLIKGKRSVSDHIAAAANYVQFLKQKTNELETKRDSLKEMASSSMVEIGNELSSDPSRLVKCVKINIIQGGVEIVICSGFEDFSSRLSDLLKIILEEGCDVVHCVTNQVNGKIFHTIKSEVKDLTCLNLARLQNKLDHAIL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0683 187 Coils Coil 66 86 - -
Tpr1g0683 187 Gene3D - 11 96 IPR036638 GO:0046983
Tpr1g0683 187 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 12 187 - -
Tpr1g0683 187 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
Tpr1g0683 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 88 IPR036638 GO:0046983
Tpr1g0683 187 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 187 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0683 Tpr-Chr1 5770929 5772414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0683 14 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 34.078 2.40e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0683 - - ccaj:109790384 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0683 1 5770929 5772414 Tpr1g0683 1 5770929 5772414 ECH
Tpr2g4425 2 48490457 48493532 Tpr1g0683 1 5770929 5772414 PCT