Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0682 ATGTTTCCTTTACAACGATGCAATGAACTGTCGATCCCGTTATCTAATAGTCTCAACCACCACCCACAACATCACAAAATCCCCCAAGATCTGATTCTTGATGATTGTGATTCTCTTGTTTTTGATTTTACTCATAAACAAATGGCTATTAGCCGGCCACCAAAGATATTACTTTATACACCACCACCAGAAGATCATAATACAAATCTCAATTATATCAAAGATGTCAATAACAAGAAGATGGTTCATAGGGAGATTGAGAAGCAAAGAAGACAAGAAATGGCTACTCTTCATGCTTCCCTTAGATCCCTTCTCCCTATTCGCTTCATCAAGGGAAAACGTTCTTTATCTGATCAAATGAATGAAGGAGTGAATTACATAAATCACATGAAGAAGAATATAAAAGAACTTAGTGACAAGAGAGATGAACTAAAAAAACTCTCAAATCTTTCCAACCTCAAAAACCATACTGTATCTTGTTGTTTCAGTATTCACAACAATAATGGAACTGTAGGAATTGAAATCAGTAACTTTAGAGATCAAGAAGGGGTCCCACTTTCTAAATTGCTGGAACAATTGATGAAAGTAGGACTTGAAGTTGTTAGTTGCTTTTCAATTGAAGTCAATGGAAGATTACTCCACAGTGTGCAGTGTGAGGTTATTGATTCTGACAGTGTAGATCTATCTGAGCTAAAAAGGAAATTTTCCAATATGAATCCATCATTTAGTTGTTCTGATTGA 741 0.3536 MFPLQRCNELSIPLSNSLNHHPQHHKIPQDLILDDCDSLVFDFTHKQMAISRPPKILLYTPPPEDHNTNLNYIKDVNNKKMVHREIEKQRRQEMATLHASLRSLLPIRFIKGKRSLSDQMNEGVNYINHMKKNIKELSDKRDELKKLSNLSNLKNHTVSCCFSIHNNNGTVGIEISNFRDQEGVPLSKLLEQLMKVGLEVVSCFSIEVNGRLLHSVQCEVIDSDSVDLSELKRKFSNMNPSFSCSD* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0682 246 CDD bHLH_AtORG2_like 79 153 - -
Tpr1g0682 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 130 IPR011598 GO:0046983
Tpr1g0682 246 Pfam Helix-loop-helix DNA-binding domain 79 130 IPR011598 GO:0046983
Tpr1g0682 246 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 244 IPR015660 GO:0003700|GO:0006357
Tpr1g0682 246 Gene3D - 72 160 IPR036638 GO:0046983
Tpr1g0682 246 Coils Coil 127 150 - -
Tpr1g0682 246 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 244 - -
Tpr1g0682 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 146 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0682 Tpr-Chr1 5765177 5768614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0682 83 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 43.030 1.75e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g0682 HLH 6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0682 - - gmx:100775836 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0682 1 5765177 5768614 Tpr1g0682 1 5765177 5768614 ECH