Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0668 ATGGCCTCTAAAGCTGAAAGTGAAAGTCCAACTGATACGCCACCATCACCGCCAAAGAATGTATACAAGGATCCGGATGATGGGCGGCAGCGGTTTTTGCTTGAACTGGAATTTGTTCAATGCCTTGCTAATCCTACCTACATCCACTATTTGGCTCAGAACCGATATTTTGAGGATGAAGCATTCATTGGGTACTTAAAGTATCTTCAGTACTGGCAACGTCCTGAATATATCAAGTTTATTATGTATCCTCACTGCCTCTATTTTCTCGAGCTTCTTCAGAATGCAAATTTTCGCAATGCAATGGCACATCCTACCAATAAGGAATTGGCGCATAGACAGCAGTTCTATTTCTGGAAGAACTATCGGAATAATCGGCTAAAACACATTTTACCAAAACCACTTCCAGAACCTACTGCTGCACTTCCTGCTTCAACTCAACCCCAACCACCTGTGCCTGCACTGCCACCGCCACCACCTGCTACAAATGTTGCTGCGACAACATCTTCTACTCAAGCTCCTTCTCCGATGCCATATGGTTCTGTTGCAAAAAATGACACAAGGAATCCTACGGTTGATAGAAGGAAAAGAAAGTGA 597 0.4372 MASKAESESPTDTPPSPPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNRLKHILPKPLPEPTAALPASTQPQPPVPALPPPPPATNVAATTSSTQAPSPMPYGSVAKNDTRNPTVDRRKRK* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0668 198 MobiDBLite consensus disorder prediction 141 198 - -
Tpr1g0668 198 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 18 119 IPR038089 -
Tpr1g0668 198 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 8 198 IPR008831 GO:0003712|GO:0006355|GO:0016592
Tpr1g0668 198 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Tpr1g0668 198 MobiDBLite consensus disorder prediction 141 163 - -
Tpr1g0668 198 MobiDBLite consensus disorder prediction 1 23 - -
Tpr1g0668 198 MobiDBLite consensus disorder prediction 164 187 - -
Tpr1g0668 198 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 8 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0668 Tpr-Chr1 5617697 5624356 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Tpr1g0668 Med31 1.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0668 K15153 - gmx:100527879 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0668 1 5617697 5624356 Tpr1g0668 1 5617697 5624356 ECH