Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0665 ATGCCAGTGAGACAAATGAAAGAAAGCTCAGAGCAACACATTGTGATTAAAACCAATTTGCAAAACCCTAATAAGATTCCACCAAAGGCTTCTCAAAATGGAAAAGCTCCACCACCAAATTCAGTAGAAAACCATAGTCAAATTTCACCTCAAGCAAGGAACAAAGGAAGAAGAAGAGGAAGAGGTGGAAGAAAATCTGATCAAGTAGAAATTTTGATGAGACCAAGTTCAAGACCATGTACTGCAATAACAAGTATTTCAAATGGTTACAATTCTAGTAACATTGATGTTGGTTTTCCTACTTCAAACAAGTCTTTGAACTTTGCTCCTAGACCTGGATTTGGAACAGTTGGGACAAAATGTATTGTGAAGGCTAATCACTTCTTTGCAGAGTTACCAGACAAGGACTTAAACCAATATGATGTTACTATTACCCCTGAAGTGTCATCAAGAACAGTAAACAGGTCCATTATAGCTGAGCTTGTGAGGTTGTATAAAGAGTCTGACTTAGGGATGAGGCTTCCAGCTTATGATGGCAGAAAAAGTCTGTATACTGCAGGACAGCTACCCTTTTCCTGGAAAGATTTTAAGATTAAGCTTGTTGATGAAGAGGATGGAGTTAATGGCCCCAAAAGGGTAAAGGAGTACAGAGTGGTGATCAAGTTTGTTGCTAGAGCAAACTTGCATCATTTGGGCCAGTTTCTAGCTGGTAAGCGTGCCGAAGCACCGCAGGAGGCGCTTCAAATTCTTGATATTGTCCTAAGAGAGCTATCAACTAAGAGGTATTGCCCCATTGGGAGGTCTTTCTTTTCACCTGATATAAGAAAACCACAACGGCTTGGAGAGGGATTGGAATCATGGTGTGGATTCTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCATCTGCTGCGTTCATCGAGCCTCTTCCAGTTGTAGAATTTGTTGGTCAGCTGCTAGGAAAAGACGTGCTGTCCAGGCCATTGTCGGATGCTGATCGAATCAAGATTAAGAAAGGCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTAAGAAGAAAATATCGTGTTTCAGGGTTAACTTCTCAACCAACAAGAGAGCTTGTGTTTCCTGTTGATGAGAATTCAACTATGAAGTCAGTAGTTGAATATTTTCAAGAGATGTATGGTTTCACGATTCAATATACTCACCTTCCTTGCCTTCAAGTAGGCAACCAAAAGAAGGCTAATTACTTGCCTATGGAGGCATGCAAAATTGTTGAAGGGCAACGTTATACGAAAAGATTGAATGAAAAGCAAATTACTTCTCTATTGAAAGTTACTTGTCAGAGACCCCGCGATCGGGAAAATGACATTTTACAAACCGTTCAACATAATGCTTATGACCAAGATCCTTATGCAAAGGAATTTGGAATTAACATCAGCGAGAAGCTAGCTTCTGTCGAAGCTCGAATTCTTCCTGCTCCTTGGCTTAAATATCACGAAAGTGGGAAAGAAAAGAACTGTTTACCCCATGTTGGCCAGTGGAATATGATGAATAAGAAAATGATTAATGGAATGGCTGTTAACCGGTGGGCATGCATAAATTTCTCACGGAGCGTGCAAGATAGTGTTACTCGCACTTTTTGTAATGATCTCGCTCTAATGTGTCAAGTATCTGGCATGGAATTTAATTTGGAGCCTGTTATACCTATCTACAATGCGAAGCCTGAGCAAGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCAACAAACAAAACTAAAGGAAAGGAATTGGAGCTTTTGCTAGCAATATTGCCAGACAATAATGGTTCTCTCTATGGTGATCTCAAGCGAATCTGTGAAACTGACCTTGGTTTAATTTCACAATGCTGTCTTACAAAGCATGTCTTCAAAATCACTAAACAGTATTTGGCTAATGTGTCTCTGAAGATCAATGTTAAGATGGGGGGTAGAAACACTGTTCTTCTTGACGCTGTAAGCTATAGAATACCATTGGTTAGCGACATTCCAACCATAATTTTTGGAGCAGATGTTACACACCCTGAAAATGGAGAAGACACTAGCCCCTCAATAGCAGCTGTAGTAGCGTCCCAAGATTGGCCCGAAGTGACAAAATATGCTGGTTTAGTATGTGCTCAAGCTCATAGACAAGAACTTATACAAGATTTATACAAAACTTGGCATGATCCTGTTCGAGGCACAGTTAGTGGCGGCATGATAAGAGATTTACTGATTTCCTATAGAAAAGCAACGGGACAAAAGCCGCTACGAATTATATTTTACAGGGATGGTGTAAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTGGACGCAATCCGGAAGGCATGTGCATCCTTAGAACCAAACTATCAGCCTCCAGTAACTTTCATCATTGTACAAAAAAGACATCATACTCGGTTATTCCCAAACAACCATAGAGACAGGAGTAGCACAGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTCGATACTAAAATTTGCCATCCAACGGAATTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACTAGTCGGCCAGCTCACTATCATGTTCTATGGGACGAAAACAATTTCACAGCAGATGGAATCCAATCTTTAACAAACAATCTTTGTTATACATATGCTAGGTGCACACGATCCGTATCCATTGTTCCACCAGCATATTATGCACATTTAGCAGCTTTTCGAGCCCGTTTCTATATGGAACCAGAAATGCAACAAGAGAATGGTTCTTCAGGTGATGGTAATTCTAGTCATAATAGTTCCAAGGGAACAACAAGAGCAGCTGGAGAATGTGGTGTTAAGCCATTACCAGCTTTGAAAGATAATGTTAAGAGAGTGATGTTTTACTGTTAA 2925 0.4027 MPVRQMKESSEQHIVIKTNLQNPNKIPPKASQNGKAPPPNSVENHSQISPQARNKGRRRGRGGRKSDQVEILMRPSSRPCTAITSISNGYNSSNIDVGFPTSNKSLNFAPRPGFGTVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSRTVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFSWKDFKIKLVDEEDGVNGPKRVKEYRVVIKFVARANLHHLGQFLAGKRAEAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRKPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKGLRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILQTVQHNAYDQDPYAKEFGINISEKLASVEARILPAPWLKYHESGKEKNCLPHVGQWNMMNKKMINGMAVNRWACINFSRSVQDSVTRTFCNDLALMCQVSGMEFNLEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSYRIPLVSDIPTIIFGADVTHPENGEDTSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISYRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFPNNHRDRSSTDKSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPEMQQENGSSGDGNSSHNSSKGTTRAAGECGVKPLPALKDNVKRVMFYC* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0665 974 Pfam Argonaute linker 1 domain 264 313 IPR014811 -
Tpr1g0665 974 MobiDBLite consensus disorder prediction 929 950 - -
Tpr1g0665 974 Pfam N-terminal domain of argonaute 120 254 IPR032474 -
Tpr1g0665 974 MobiDBLite consensus disorder prediction 929 952 - -
Tpr1g0665 974 MobiDBLite consensus disorder prediction 12 51 - -
Tpr1g0665 974 ProSiteProfiles Piwi domain profile. 604 925 IPR003165 GO:0003676
Tpr1g0665 974 MobiDBLite consensus disorder prediction 1 70 - -
Tpr1g0665 974 Gene3D - 494 667 - -
Tpr1g0665 974 SMART PAZ_2_a_3 320 452 IPR003100 GO:0005515
Tpr1g0665 974 SMART Piwi_a_2 604 925 IPR003165 GO:0003676
Tpr1g0665 974 CDD Piwi_ago-like 474 924 IPR045246 -
Tpr1g0665 974 CDD PAZ_argonaute_like 315 429 - -
Tpr1g0665 974 Pfam PAZ domain 342 446 IPR003100 GO:0005515
Tpr1g0665 974 Gene3D paz domain 309 434 - -
Tpr1g0665 974 PANTHER PROTEIN ARGONAUTE 10 54 973 - -
Tpr1g0665 974 Pfam Argonaute linker 2 domain 456 502 IPR032472 -
Tpr1g0665 974 Gene3D - 673 974 IPR036397 GO:0003676
Tpr1g0665 974 SMART DUF1785_2 263 315 IPR014811 -
Tpr1g0665 974 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 54 973 - -
Tpr1g0665 974 Pfam Mid domain of argonaute 513 590 IPR032473 -
Tpr1g0665 974 SUPERFAMILY PAZ domain 310 470 IPR036085 GO:0005515
Tpr1g0665 974 SUPERFAMILY Ribonuclease H-like 596 925 IPR012337 -
Tpr1g0665 974 ProSiteProfiles PAZ domain profile. 316 430 IPR003100 GO:0005515
Tpr1g0665 974 Pfam Piwi domain 605 924 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0665 Tpr-Chr1 5583938 5591047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0665 104 974 Eukaryotic Initiation Factors Gene Family AT5G43810 87.729 0.0 1643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0665 K11593 - gmx:100816999 1759.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3980 2 42290686 42293468 Tpr1g0665 1 5583938 5591047 PCT