Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0647 ATGGCTGGTAGGTTACCTGGTGTTGGATTGTCACCAAGAAAAAGATCAGAAAATCATCACAACAGACATGAACACTATGTTACCTACAGAGACTCTTCCTATCTAAGGGAATCATTGGAGACACCATGGACTTCAATGACTACTACCTTAGATGAAAGTGCTTTCAAAGCCAAACAAAGGCTTCAGAAGAAACTTGGTTATTCTCCCAGGTCAATTGAACAAAATCCCAAAAAAGAAGGAAAAGAAAGTAAAAGCAAATTCAACAAGAAAGATACAGGACTAGGTAGGAAGTTACTAGAAAGTTCATGGTTATTACGTGGAAACAAGTTTAAGAAAGATACAAAAGTTTGTGCTGTGTGCTTAGAAGATTTTCATCAAGATGAAGAAGTTATGAACCTTTCTTGCTCACATAAGTATCATTCAGCATGTCTTATCCCTTGGCTTGAAAAACACCCTCACTGTCCTTATTGTAGAACCATGGTTGTGCCAAGTGATTAG 498 0.3755 MAGRLPGVGLSPRKRSENHHNRHEHYVTYRDSSYLRESLETPWTSMTTTLDESAFKAKQRLQKKLGYSPRSIEQNPKKEGKESKSKFNKKDTGLGRKLLESSWLLRGNKFKKDTKVCAVCLEDFHQDEEVMNLSCSHKYHSACLIPWLEKHPHCPYCRTMVVPSD* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0647 165 MobiDBLite consensus disorder prediction 74 90 - -
Tpr1g0647 165 MobiDBLite consensus disorder prediction 61 90 - -
Tpr1g0647 165 MobiDBLite consensus disorder prediction 1 24 - -
Tpr1g0647 165 Pfam Ring finger domain 116 158 IPR001841 -
Tpr1g0647 165 CDD RING-H2_PA-TM-RING 116 158 - -
Tpr1g0647 165 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 27 159 - -
Tpr1g0647 165 SUPERFAMILY RING/U-box 116 163 - -
Tpr1g0647 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 164 IPR013083 -
Tpr1g0647 165 SMART ring_2 117 157 IPR001841 -
Tpr1g0647 165 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 27 159 - -
Tpr1g0647 165 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0647 Tpr-Chr1 5424147 5426278 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0647 111 162 C3H Transcription Factor Family AT3G58720 44.231 1.41e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0647 - - gmx:100527548 226.483