Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0645 ATGGAATCCTCTTATAGTTATGGCCTTGCCATAAAATTCTTAATTTTCCTCCTTACCATTCTCAACTCCATCAATCCCTCATACCAATCACTACCACAACTAAATCCAAGACTCATCAAAGCCTACACAGCACTCCAAGCATGGAAACAAACATTCACCTCTGACCCAAAAAACTTCACCTCAAATTGGTATGGCCCAAATGTATGCAACTACACAGGTATCTACTGTGCACCATCACCAGATGATCCCTACATCTACACAGTTGCTGGTATAGACATAAACCATGCAAAAATATCAGGTTCATTACCAGAAGAACTTGGTCTTTTAACAGACTTAGCTCTTTTCCATATAAACTCAAACAGTTTCTATGGTTCCATCCCAAATAGTTTCAGTTATCTTCACCGTCTCCACGAACTCGATATCAGTAACAATAAATTCTCAGGATCATTTCCGGAACCGGTTCTCTGCATTCCTTCGTTAAAATTCTTAGACATAAGATTCAACAATTTTCAAGGAAATGTTCCTGAAAAGCTTTTTGACCTTAAACTTGATGCTCTTTTTATTAACAATAATAAATTCCAATTTTCTTTGCCCGAAAATTTTGGAAACATGCCGGCTTCTGTCATTGTCTTCGCGAACAATGATATGAAAGGTTGTATTCCATCGAGCGTAGTAAATATGAAGGATACGATTAACGAGATTATAATGACGAATAGTGGAATGAAAGGCTGTTTACCCGACGAAATCGGGAAGTTGGATAAGGTGACAGTGTTTGATGTTAGTTTTAATGAGTTTGTTGGTGAATTGCCTGACTCTATTGGTAAAATGAAGAGTTTGGAAGAGTTGAATGTGGCGCATAATCGATTTTCGGGTGTGGTTCCGGAGAGTATATGTAGGTTGCCAAGGTTGGAGAATTTTACTTATTCTTATAATTTCTTTAGTGGTGAATCTGAAAGTTGTGTTAAGTTGGGTAATCATAAGGATGATAAGAAGAATTGTATTCCTTATAGGCCTTTGCAAAGGTCTAGTTATGAATGTCAAGTTTTTTATGAACATCCTGTTCATTGTACTGGTGTTGGTTGTTCATTTACAACTCTGTCACCTCCTCCGCCTCCACCACCGCCGCCTCCACCACCGCCACCTCCTCCCCCACCTCCTCCACCACCTCCACCGCCACCACCTCCCCCTCCTCCTCCACCTCCACCACCTCCTCCCCCACCTCCACCACCACCACCACCTCCCCCACCGCCACCACCATCACCTCCTCCGGTAGCTTACTACCACTATCTTTGA 1293 0.4169 MESSYSYGLAIKFLIFLLTILNSINPSYQSLPQLNPRLIKAYTALQAWKQTFTSDPKNFTSNWYGPNVCNYTGIYCAPSPDDPYIYTVAGIDINHAKISGSLPEELGLLTDLALFHINSNSFYGSIPNSFSYLHRLHELDISNNKFSGSFPEPVLCIPSLKFLDIRFNNFQGNVPEKLFDLKLDALFINNNKFQFSLPENFGNMPASVIVFANNDMKGCIPSSVVNMKDTINEIIMTNSGMKGCLPDEIGKLDKVTVFDVSFNEFVGELPDSIGKMKSLEELNVAHNRFSGVVPESICRLPRLENFTYSYNFFSGESESCVKLGNHKDDKKNCIPYRPLQRSSYECQVFYEHPVHCTGVGCSFTTLSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPVAYYHYL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0645 430 Gene3D Ribonuclease Inhibitor 207 335 IPR032675 -
Tpr1g0645 430 PRINTS Proline rich extensin signature 362 374 - -
Tpr1g0645 430 PRINTS Proline rich extensin signature 376 392 - -
Tpr1g0645 430 PRINTS Proline rich extensin signature 396 408 - -
Tpr1g0645 430 PRINTS Proline rich extensin signature 412 430 - -
Tpr1g0645 430 SUPERFAMILY L domain-like 41 323 - -
Tpr1g0645 430 Gene3D Ribonuclease Inhibitor 40 206 IPR032675 -
Tpr1g0645 430 Pfam Leucine rich repeat N-terminal domain 43 76 IPR013210 -
Tpr1g0645 430 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 375 - -
Tpr1g0645 430 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 20 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0645 Tpr-Chr1 5409860 5411698 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0645 32 361 Leucine-rich Repeat extension Gene Families AT3G22800 65.861 2.90e-161 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0645 - - gmx:100813811 552.362