Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0642 ATGACGAATAGTGGAATGAAAGGCTGTTTACCGGACGAAATCGGGAATTTGGATAAGGTGACAGTTTTTGATGTTAGTTTTAATGAGTTTGTTGGTGAATTGCCTGACTCTATTGGTAAAATGAAGAGTTTGGAAGAGTTGAATGTGGCGCATAATCGATTTTCTGGTGTGGTTCCGGAGAGTATATGTAGGTTGCCAAGGTTGGAGAATTTTACTTATTCTTATAATTTCTTTAGTGGTGAATCGGAAAGTTGTGTTAAGTTGGGTAATGGTAATCATAAGGATGATAAGAAGAATTGTATTCCTTATAGGCCTTTGCAAAGGTCTATTTATGAATGTCAAGTTTTTTATGAACATCCTCTTCATTGTACTGGTGTTGGTTGTTCTTTTACAACTCTGTCACCTCCTCCTCCGCCACCTCCTCCACCGCCACCTCCTCCGCCACCACCTCCACCACCGCCACCTCCACCTCCTCCACCACCACCTCCCCCACCTCCACCACCTCCCCCTCCTCCTCCGCCACCACCTCCCCCACCGCCACCTCCTCCTCCACCGCCACCGCCTCCCCCTCCTCCTCCGCCACCACCTCCCCCACCGCCACCTCCTCCACCTCCCCCTCCTCCAGTAGCTTACTACCATTATCTCTAA 648 0.4892 MTNSGMKGCLPDEIGNLDKVTVFDVSFNEFVGELPDSIGKMKSLEELNVAHNRFSGVVPESICRLPRLENFTYSYNFFSGESESCVKLGNGNHKDDKKNCIPYRPLQRSIYECQVFYEHPLHCTGVGCSFTTLSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPVAYYHYL* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0642 215 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 142 - -
Tpr1g0642 215 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 1 142 - -
Tpr1g0642 215 PRINTS Proline rich extensin signature 135 151 - -
Tpr1g0642 215 PRINTS Proline rich extensin signature 152 169 - -
Tpr1g0642 215 PRINTS Proline rich extensin signature 170 195 - -
Tpr1g0642 215 SUPERFAMILY L domain-like 5 81 - -
Tpr1g0642 215 Gene3D Ribonuclease Inhibitor 1 103 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0642 Tpr-Chr1 5386772 5387419 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0642 1 81 Leucine-rich Repeat extension Gene Families AT3G22800 33.333 3.58e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0642 - - gmx:100813811 194.512