Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0638 ATGGATGCACCAGAGGAGAACAAGAATCTCCCTTTTTCCAACAAACAAGAAGAGGACGATTATTGGTTTCACGAATACATCGTTAGTCTACTCTCGGTTGAGGAGGCTGTCCCTATTGATGAATTGCTTGGCAAGCAAGAACCAGGTGTTGGCTATGTACAAGATGGCTATATGAAGGATTCAGTTGATGTTGGAACGAAACCTGAACTACCGAGCTGCACATCTTCACTGCATGAGAAGAATGCTGCTAGTTATCAAAAATCATTACTTCCTAGTTGTTACACTAGTGACTCACAAAGGTGTGTTTTGCCAAGAAATGATTCTTATGTGATTGCACTTCCAGCCTTAAATAGGTCTTCTGCAACGAAAACTGAATCATCGAGCAGCACTTCTTCCTGGCTTCTTTCTGCCAGCGAAGGGAATTGCATATCGCAGGTCCCTGCATCAACGGAGAGATATTTGGGGCCACCCGAGATTGAAGTTCAGGCTACTAAAGATTTCACTCAGTCATCAGTTCACGTTGCTAGGTCTTCTGCAAGGTATCCTGAATCGCCAAACAGTACTTCCTCTTTGCTTCTTTCTGCCAGCCAAAGGCATTGCCTACCGCAGGTCCCTGCATCAGCGGAAAGATATTTTGGGCCATCCGAGATTGAAGTTCAGGCTACTAAAGATTTCAATCGGTCATCAGCTCACATTGCTAGGTCTTCTGCAAGGCATCCTGAATCGCCAAGCAATACTTCTTTTCTTCTTCCTGCCAGCCAAGGGAATCACCTATCGTCGCTGATTCCTACACCAACGGAAAGACATTTGAGGCCATCCGAAATTCAAGTTCATGCTACTAACGATTTCACTCAGTCACCATTTCACAATGCTAGGCCTTCTCCAAGGAAACTTGAATCACCAAGCAGTACTTCTTCTTTCCTTCTTCCTGCCAGCCAAGGGCATCGCCTATCCCTGATCCCTGCATTAACGGAAAGACATTTGGGGCCATCCGAGATTGAAGTTCAGGCTACTAAAGATTTTACTCAGCCGTCAGTTCACATTGCTGGTGAAGATTTCGGTCAGAGTATCTCCCAAAGGAAGAGGAAAATGCACAATTCTGATATAACTGAGCAAGGAGGGTCATGCAGAAACTGTAACTGTACATCAAACTGTTTGAAACCTTATTGTGAATGCTTTGCTGCCGGAGTCTACTGCGCAGAACCTTGCACATGTAAAGGGTGCTTAAATAAATCTATCAATGAATATATAGAAATTATGCAAACTCGCAGGAATACTGAGTCTAGCGTTCCACACTTACTTGTTCCTAAAGTCATAAGAAGTCCTGTTACCTCACCTCCAATTGGGGATAACCCCAACAAAACTCCAGCATCAAAGATATGCCATTGCAAGAAAATAGGCTGCCATATGAAATCTTGTTCTTGTTCTAAGGGTCGTGTCGGTTGCTCCATTAGTTGTAAATGTGAAGGGTGCGAAAATATGTACGGTAGAAAGGATAACAAAGAACTTCGACGGGAATCAAATGCTTTTGGATCTCAAACTAAATTTGAAAAGCATTTTCAAACTGTTCCATATGATGATGATGATTCAACTTACATTCCATAA 1605 0.4305 MDAPEENKNLPFSNKQEEDDYWFHEYIVSLLSVEEAVPIDELLGKQEPGVGYVQDGYMKDSVDVGTKPELPSCTSSLHEKNAASYQKSLLPSCYTSDSQRCVLPRNDSYVIALPALNRSSATKTESSSSTSSWLLSASEGNCISQVPASTERYLGPPEIEVQATKDFTQSSVHVARSSARYPESPNSTSSLLLSASQRHCLPQVPASAERYFGPSEIEVQATKDFNRSSAHIARSSARHPESPSNTSFLLPASQGNHLSSLIPTPTERHLRPSEIQVHATNDFTQSPFHNARPSPRKLESPSSTSSFLLPASQGHRLSLIPALTERHLGPSEIEVQATKDFTQPSVHIAGEDFGQSISQRKRKMHNSDITEQGGSCRNCNCTSNCLKPYCECFAAGVYCAEPCTCKGCLNKSINEYIEIMQTRRNTESSVPHLLVPKVIRSPVTSPPIGDNPNKTPASKICHCKKIGCHMKSCSCSKGRVGCSISCKCEGCENMYGRKDNKELRRESNAFGSQTKFEKHFQTVPYDDDDSTYIP* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0638 534 MobiDBLite consensus disorder prediction 282 304 - -
Tpr1g0638 534 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 228 508 - -
Tpr1g0638 534 ProSiteProfiles CRC domain profile. 375 496 IPR005172 -
Tpr1g0638 534 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 228 508 IPR044522 GO:0003700
Tpr1g0638 534 SMART CXC_2 374 414 IPR033467 -
Tpr1g0638 534 SMART CXC_2 456 497 IPR033467 -
Tpr1g0638 534 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 377 411 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0638 Tpr-Chr1 5363164 5365845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0638 361 526 CPP Transcription Factor Family AT3G22780 45.930 3.45e-39 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Tpr1g0638 TCR 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0638 - - gmx:100804447 223.402