Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0636 ATGGATGCAATAGAAAACAAGAACGCCCCTGTTTCCAACTTACAAAAAGAGGATGATTCTTTGTTTGACTACCTCAATATTCTATCTCCTTTAAAGACCAAAACGCGCGTTGAAGCTACTCTAACGTTGAACTCACTTGGCATGGATTATTCACTTCTGGCATCAAAGCCTAAAGTTTCGTCCGAAGATGTAAATAAAATATATAGACATGAAGAAGCTCTTACTGATTCTACTCATGGATGTCAATACTCACTTGGGCCATCTAGTCAACATAAAAAGATCGAGCTTCCACAATCTATGCAATATAGTCCTTATAGCTCCGAACAACGTCCTCTAATTTCAACTGAAGAGGCTAACTGGGCTCTTGAATTACTTGGCATGCAAGTACCAAATGGTACCAATGTACAAGACGATTCTATGAAAGATTCAGTTGAGTGTGGAACATATATTCCGGAAGTAGGTTCGGTTCAGGCAAACATTGAAGGAGCGGATTGTGATTCTAATCACTTAAGTAGTATAACACAATTAATGAATCTGCCGCCACAATCTAACACTAGCAGTAATTATAAAATGCAAAATGTTGAACATGTTGCTTCTAGTTCAAAACATGAAATTGAATATAATCCTTCTGAACCTATAGCTGCAACAGACATAAATCAAACCCCGAACAATCTTGCCAATGTTGCTTTAATGGATAGCAATCCAATTGCGAGAGGGATCGATGAGCTTGCAAGTATTAAACGCAGTATAACGAGGTCCTGTCTAAACTATCAGCCTGAGATGACCAGTTTGCAAATGAATGCTATCAATGAAAACCCATTGCTTCATAGAAAAAACACTAGTTATTCACAAATGTGTGTTTTGCCAAGAAATGATATTTACTTAAATGAAAAGATGTCTTCTGGAAGGAAACCTGAATCACCGAGCTGTACTTCTTCTTTGCATCTTTCTGCAAGGCAAGGCCATCACCTATCGCCGGTCCCTGCACCAATGGAAAGACATTTGGTGCCATCTGAGAATGATGATTTCACCAAGTCATCAGTTCACATTCCTGGTGAAGATTTCTGTCGGAGTACCCCCGACCTGATGAGTAGAGTGCAATTTAACGACCTAACGAATAAACTATTGGATGAAAACATGAAAATGACGTCAAAAGTGCATAGTAAAGATTCGATTGGTCTAATTTCTTCTGGCTCAGAACATGAAATGGAGGAGGAAAGTGTTGATTTCTGTCAGAATATCCCCAAAAGGAAGAGGAAAAGGTCCGATCTAACTAGGGAAGGAGGGGCATGCAGAAGCTGTAAATGTAAAAAATCAAGGTGTTTGAAAAATTATTGTGAGTGCTTTGCTGCTGGAGCCTACTGCATAGGACCTTGCTCATGTATAGACTGCTCGAATAAAGGAGATAATGAAGATACAGTTCTGCAAGCTCGCAGGAATAATGATTCTAAAGTCGTAACAAGTGCTAATTCCTCACCTCAATTTGAGGGGGACCCTAACATAACTTTAGCTTCAAAGCCAAAGCTACAGAAAAGACTATGTAATTGCAATAAATCAGGTTGCCAAAGGAAATATTGCGCATGCTTTAAGGATGGTGTTGGTTGCTCTCCAATTTGTAAATGTCAAGGGTGCAAAAATATACATGGTAGAAAGGATAGTACAGCTGAAACAAAATCTGAGCTTGAAGAAACAAAAACATTACAAGTTTCCAGAACATTTCCTCCATTACCATATTCATCGATGGGAATGTCGCCTCAAATATTGTGTTCTGAATTGTTCGGCAGCCAAAACCAGGAGCTTGTGGAATCAAATGCTACTGGATCAATAACTATTCCAGATGATGTAAATTGCATCAATACTTCTTCTATTGGCAAGTGGATATGCATTTCTAATCCTGGATGCGAAAATGGCGTTGAATCATCACCTACTCGAAGTGGTGGCCAGAACTCGACATTAGAATGA 1962 0.3909 MDAIENKNAPVSNLQKEDDSLFDYLNILSPLKTKTRVEATLTLNSLGMDYSLLASKPKVSSEDVNKIYRHEEALTDSTHGCQYSLGPSSQHKKIELPQSMQYSPYSSEQRPLISTEEANWALELLGMQVPNGTNVQDDSMKDSVECGTYIPEVGSVQANIEGADCDSNHLSSITQLMNLPPQSNTSSNYKMQNVEHVASSSKHEIEYNPSEPIAATDINQTPNNLANVALMDSNPIARGIDELASIKRSITRSCLNYQPEMTSLQMNAINENPLLHRKNTSYSQMCVLPRNDIYLNEKMSSGRKPESPSCTSSLHLSARQGHHLSPVPAPMERHLVPSENDDFTKSSVHIPGEDFCRSTPDLMSRVQFNDLTNKLLDENMKMTSKVHSKDSIGLISSGSEHEMEEESVDFCQNIPKRKRKRSDLTREGGACRSCKCKKSRCLKNYCECFAAGAYCIGPCSCIDCSNKGDNEDTVLQARRNNDSKVVTSANSSPQFEGDPNITLASKPKLQKRLCNCNKSGCQRKYCACFKDGVGCSPICKCQGCKNIHGRKDSTAETKSELEETKTLQVSRTFPPLPYSSMGMSPQILCSELFGSQNQELVESNATGSITIPDDVNCINTSSIGKWICISNPGCENGVESSPTRSGGQNSTLE* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0636 653 SMART CXC_2 429 470 IPR033467 -
Tpr1g0636 653 SMART CXC_2 509 550 IPR033467 -
Tpr1g0636 653 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 175 565 - -
Tpr1g0636 653 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 206 - -
Tpr1g0636 653 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 432 467 IPR005172 -
Tpr1g0636 653 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 512 546 IPR005172 -
Tpr1g0636 653 ProSiteProfiles CRC domain profile. 430 549 IPR005172 -
Tpr1g0636 653 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 175 565 IPR044522 GO:0003700
Tpr1g0636 653 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 206 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0636 Tpr-Chr1 5336653 5339787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0636 383 565 CPP Transcription Factor Family AT3G22780 44.000 1.53e-39 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Tpr1g0636 TCR 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0636 - - mtr:MTR_1g103230 534.643