Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0633 ATGGATTCCAATAACCCTTACGAGATCGTCGACGAAGACGATGAGGGATTGGATTGGGAAGCAGTTGCAATAGCAGCCGATGCCGCTTGCCAAATGAATAGTGAAGCAAAATCAAATGGAAATGAAGCGGAAAAGGTTTATCAAAAGGGGAAGGAAAAGGGAAAACAATCCACTCTTGATAATTTCGTTCGAATATCGAAAAAGGGAACTGAAACGATTCATTGTGAAGAAAATGATGTTGAAGAATCTACGTGCACTCATCTCATTGATACTGAAGCAGCCAAAACTTGGATATACCCAGTTAATGTTCCTCTCCGTGACTATCAATTCCATATTACTCAGACTGCACTCTTTCAAAACACATTGGTCGCTTTGCCAACAGGACTTGGCAAAACTCTCATTGCCGCTGTTGTCATGTTTAACTACTTTAGATGGTTTCCTGAAGGGAAAATAGTATTTGCTGCTCCTTCTCGACCACTTGTCATGCAACAGATAGAAGCATGCCATAACATTGTGGGGATACCTCAAGAATGGGCAGTTGATATGACTGGTCAGTTAAGTCCTCCCAAAAGAGCTCGTTTGTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAAAAAGACATTCAATCGGGTAAATGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACTCTTATTGCGAAGCAGTTCGTGAGTTAATGGCTGTACCGGTGCAACTAAGAATATTAGCATTAACTGCAACACCAGGATCAAAGCAGCAGACCGTCCAGGATGTTATTAATAATTTGCATATCTCCAAGCTCGAACATCGCAGTGAAACTGACCATGACGTTATTTCATATGTTCACGACAGGAAGTTAGAGTTGATACAGGTTGCAATGGGCCAAGATGCTGTAGAAATAAACGATAAGTTTTTGGAAGTGATACGCCCTATTGTAGCCAGGCTTACTAAAATTGGGGCCATTCAGAATAGAGATTATCGTACTTTGAGCCCTTGTGTATTACTTGAAATGAGGGAAAAGTTTCGTCAGGGGCACATGCAAGATCTTTCACATATCAACTCTGGAGACGTTGAAGGGTATTTTGGAGTTCTTATTACTCTTTATTACATCCATAAACTGCTTTCAAGTCACGGAATAAGGCCAGCATATGAGATGCTTGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATATATGAGTAAAAATGAAGATATTCTGAAAGCAAGGCAACTAATGCAGCAAAGCTTGTCTCATGGAGCATCGAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAACTCCAGGGTGATTATTTTCTCCAATTACAGAGAAAGTGTCAGGGACATAATGGTTGCACTTGGAGGTACTGGGGATCAAGTTAGAGCTACCGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGCCAGTCCCAGAAAGTTCAACAGGCTGTGCTTAAGAAATTTCGGTCCGGTGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTAGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGTATGGGGAGAACTGGAAGAAAGCATGATGGACGAGTTGTAGTTTTAGCTTGTGAAGGGGCAGAGATGAAAGGCTACTTGAAAAAAAAGGCAAAGAGCAAGACTATAAGTAAACACATGCGAAATGGGGGCGTAAATAGCTTTGATTTTCATCCCAGTCCAAGGATGATTCCCCACGCCCTTAAACCAGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCTCGTCAAAAGAATGTGATAGAAGACCATCTTCAAATTTCTGCATCGAAAGACAAACTCACTCTTGATGAAATTGGTTTACTTGAAAATTATTTTCCCTCTACCGGTGAAAATAAATGTAGACTGTCTCTTATCGCCTTCCCTCACTTTCAGACATTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCTATGGATCGTTGATGCTTATAGACACGATGCAGCGTTTGCAAGGACTGCCTACATGTCCAGGAGATAGCGAAAATTCTTCCCTTCAGGAAAGGCGGTGTTTAGAAAATAGTAAACCCGTTGTCATTATTGATCTTGATGAAGCTAAAAACGATAATGAATTATGCTCTAGGGATGCAATGGGAAGGAATGTAGATTCTGTAAATTCTCTGGAGCTTGATTCTGGTGACATGGGTAAGCATCAAGAGGAAACATGTGATGTTAATGAGACAATTCCTGAGACTCCAGATGCCAAGAGAACTTTGTCAAATGAAGGAGCTAATGCCACTGAAACAGCAAATCCTATTGAGCAGTTTTCTTCATTGGCTGTAGATGCTTGTGATACCGACATGAGAGATGAAGAACTTAGCCCCCGTTTAACTAATTTGATTATAAGTGGTGTTGTTCCTGAGTCTCCCATTGATGAAAGAGGGCAATCAAGAAACAGGTTTGTCATTCGAGGTTGTATTTCACCTGTTCATCTCCAGGAAGAACAGGATGTTCCCTCATTAAGTTGTAGGGAAACTGAAAAAGTCATTGTTGATAGTAGCGCTGGTAAGAATGTATGTACTTCTGTTAATGAAACCCAAACCCCTTTGCTCGAGTTGAAGAATTGTGCAATTAGAAGAGGACGTGTCTTTGTTTCTCAAATTGAGGAAGGGCGTATACAAAATGTTGACCCAAGCTTCAGCGAAGAATCACATCCAGGTTGTGGTGAAAGATCTGTAACCATTAAACCTGCTCGCAAATTTAAAAGGTTGAGGAAAGTTGAAGATACTGAAAGTAACATGAATCAGAAAAAGAATAATATTTTTGATTCAACAGAGAACGTTTCCAAACCATCACCTGCCTCCAACCCCAAACGATATAAGCATGGCCAAGGTATAAGGAAACCAGTAAATGTGAGAGACTTCATTGAGGAGGAAGCCGAGGTATCTTCAGATGCCTCTGTATCTAATGATGAAGATGTTGAGGATGGCAATTCTTGTGACAGTTTCATAGATGACCGAATCAATGCTACAGCAGCCAGTCAGCCTGAAGCTAGTAGAATAGACATGATGGCAATTTACAGGCGTTCGTTGCTCAGTCAAACACCTATTAGTGGAGGACCAAAGTTTTCCACTACCTTCAGTCCTGACAATGTGACTATGACAGCCAGTATTGGTGAAAGTGGTAATTCATCAGGCAAGACAGCGAGTCGTTTCCAGACAGGACAGACCAGTCATTCAGCTAATCGAACTTCAGAATCAGTATGTCTGGACCAGATGACCTCAGAAGCAGTGCCTTCGACCAGTTTTCCAACAGAGACAGATATAAGAAGCCGTAAAAGAAGATTGGCATTTCATCATTCTGGACATTTTCCAAGTATGAATCTTGAACCTGAATTTGCACTTCAATCAAAGAAAGAATCAGTGAATGGCAATGCAACTATAGATGTTCTATGTGATGATCAATTTTATAATGATATTGATCTTGATGAGTTGGAGGCGCAAGCAACTTCGATTCTGAAATGGAAATTAGATTTGTCAATTCCGAAACAAGATATAAACCCTCAATCTCATGAACCGAACCTTGATGTTAGTATGTCTCCATCATTCGACCTTGGTATATGA 3726 0.4023 MDSNNPYEIVDEDDEGLDWEAVAIAADAACQMNSEAKSNGNEAEKVYQKGKEKGKQSTLDNFVRISKKGTETIHCEENDVEESTCTHLIDTEAAKTWIYPVNVPLRDYQFHITQTALFQNTLVALPTGLGKTLIAAVVMFNYFRWFPEGKIVFAAPSRPLVMQQIEACHNIVGIPQEWAVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIQSGKCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMAVPVQLRILALTATPGSKQQTVQDVINNLHISKLEHRSETDHDVISYVHDRKLELIQVAMGQDAVEINDKFLEVIRPIVARLTKIGAIQNRDYRTLSPCVLLEMREKFRQGHMQDLSHINSGDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGFFAKYMSKNEDILKARQLMQQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMVALGGTGDQVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVLACEGAEMKGYLKKKAKSKTISKHMRNGGVNSFDFHPSPRMIPHALKPEVQYVELSIEKFIPRQKNVIEDHLQISASKDKLTLDEIGLLENYFPSTGENKCRLSLIAFPHFQTFPSRVHKVKHSYGSLMLIDTMQRLQGLPTCPGDSENSSLQERRCLENSKPVVIIDLDEAKNDNELCSRDAMGRNVDSVNSLELDSGDMGKHQEETCDVNETIPETPDAKRTLSNEGANATETANPIEQFSSLAVDACDTDMRDEELSPRLTNLIISGVVPESPIDERGQSRNRFVIRGCISPVHLQEEQDVPSLSCRETEKVIVDSSAGKNVCTSVNETQTPLLELKNCAIRRGRVFVSQIEEGRIQNVDPSFSEESHPGCGERSVTIKPARKFKRLRKVEDTESNMNQKKNNIFDSTENVSKPSPASNPKRYKHGQGIRKPVNVRDFIEEEAEVSSDASVSNDEDVEDGNSCDSFIDDRINATAASQPEASRIDMMAIYRRSLLSQTPISGGPKFSTTFSPDNVTMTASIGESGNSSGKTASRFQTGQTSHSANRTSESVCLDQMTSEAVPSTSFPTETDIRSRKRRLAFHHSGHFPSMNLEPEFALQSKKESVNGNATIDVLCDDQFYNDIDLDELEAQATSILKWKLDLSIPKQDINPQSHEPNLDVSMSPSFDLGI* 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0633 1241 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 280 IPR014001 -
Tpr1g0633 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 573 IPR027417 -
Tpr1g0633 1241 PANTHER FANCONI ANEMIA GROUP M PROTEIN 18 733 IPR039686 GO:0006281|GO:0043138
Tpr1g0633 1241 PANTHER FANCONI ANEMIA GROUP M PROTEIN 771 1206 IPR039686 GO:0006281|GO:0043138
Tpr1g0633 1241 Gene3D hef helicase domain 309 431 - -
Tpr1g0633 1241 MobiDBLite consensus disorder prediction 968 988 - -
Tpr1g0633 1241 CDD SF2_C_FANCM_Hef 436 570 - -
Tpr1g0633 1241 MobiDBLite consensus disorder prediction 1093 1124 - -
Tpr1g0633 1241 MobiDBLite consensus disorder prediction 1222 1241 - -
Tpr1g0633 1241 SMART ultradead3 101 294 IPR014001 -
Tpr1g0633 1241 Gene3D - 432 592 IPR027417 -
Tpr1g0633 1241 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 438 609 IPR001650 -
Tpr1g0633 1241 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 771 1206 - -
Tpr1g0633 1241 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 18 733 - -
Tpr1g0633 1241 CDD DEXDc_FANCM 103 284 IPR044749 GO:0005524
Tpr1g0633 1241 Pfam Helicase conserved C-terminal domain 445 561 IPR001650 -
Tpr1g0633 1241 SMART helicmild6 472 562 IPR001650 -
Tpr1g0633 1241 Pfam Type III restriction enzyme, res subunit 118 262 IPR006935 GO:0003677|GO:0005524|GO:0016787
Tpr1g0633 1241 Gene3D - 101 295 IPR027417 -
Tpr1g0633 1241 MobiDBLite consensus disorder prediction 961 997 - -
Tpr1g0633 1241 CDD FANCM_ID 312 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0633 Tpr-Chr1 5293643 5308915 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0633 393 560 Eukaryotic Initiation Factors Gene Family AT3G13920 26.923 2.65e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0633 K10896 - gmx:100820078 1547.72