Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0627 ATGTTCTCTTTCCCTAATAATAGTTTCCTTTCATCTTCATCTTCTTCTTTATCTTACCCTAATAATAATACCCTTTCTTCTTTTCTTGAAAATGATTTTCCAAATAACAACACTTCTCTACTTCATCATAATCCACCACTACTTTCTACTGTTCCTTTCACTGATAATATTGTTCCATTATTCCATGATCATCATCATCATCATCATGAAACTGGTAATTTTTCAGATTGTAACAACATTACAATGTTTGAACCAGATTCGTCAAACTTTGTTGGTAATATTCTTCCAATTCCAAATTTTGTGACAGAACAAAAACAATTACCAGCAGCAACAGTGATTAATGGTGGAAAGAAAGATAGACACAGTAAGATTCACACATCACAAGGTTTAAGAGACAGAAGGGTAAGATTGTCAAGTGAAATAGCAAGAAAATTCTTTGATCTTCAAGATATGTTAGAGTTTGATAAACCAAGTAACACACTTGAATGGCTTTTCACTCAATCTGACACTGCAATCAAAGAACTTGCTAGAACTAAAAACAACGGCGACTGCGGTTACAACGTCGACAACAAGGCCTTCTTTGATTCAAATAGCAACAAATCATTTTCCTCGGGTGGCGGTGTTGGTGGTGGTGTTGACGGTTGTTCTTCGAAAGGAAGAAAATTGAAATGGACACAAAAAGAAGAAACAAAAAAGGAATCAAGAGAAAGAGCTAGAGCTAGAGCAAGAGAAAGAACTTGTTACAAGATGTGTAGTAATAATGGAAGAATGCAAGAAGAAATTAGGTACCCTAACCCTACAATAACAGATTCAACAACTACTACTCAACAAATGTTACTTCAACAATTGATGTCATCAACATCATCACCTGTTGATAGTACTGAAACCGAGGCTTATGCAAGATGGCGTCATCTTCTTCAACTTCAAACCTATAACAACTCTTCTTCTCTTCATAATCATCATCATCATAATCACTTGTTGGATAGTGAAATAGCTAGAGATCATGGTGGATTTAATGTCATTGAAGAATCTATTATGATTAAAAGGAATATGATGTCTTCTTCTTCTTCTCAGTATCAACATCACCAAAACCTAATTCCTAATATCCCTAAGGAATTACCAAATTTGAGTTTCAACAATAATATTAATGATTACCCTTTATTCCCTTCAAATTGGGAGAATAATGGAGGATGCTCTAGCTTTTGTGGAATAGCTACTATGAATCTATCTACATGCTTCATGAATCAGTGA 1251 0.3437 MFSFPNNSFLSSSSSSLSYPNNNTLSSFLENDFPNNNTSLLHHNPPLLSTVPFTDNIVPLFHDHHHHHHETGNFSDCNNITMFEPDSSNFVGNILPIPNFVTEQKQLPAATVINGGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTQSDTAIKELARTKNNGDCGYNVDNKAFFDSNSNKSFSSGGGVGGGVDGCSSKGRKLKWTQKEETKKESRERARARARERTCYKMCSNNGRMQEEIRYPNPTITDSTTTTQQMLLQQLMSSTSSPVDSTETEAYARWRHLLQLQTYNNSSSLHNHHHHNHLLDSEIARDHGGFNVIEESIMIKRNMMSSSSSQYQHHQNLIPNIPKELPNLSFNNNINDYPLFPSNWENNGGCSSFCGIATMNLSTCFMNQ* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0627 416 Pfam TCP family transcription factor 116 252 IPR017887 -
Tpr1g0627 416 MobiDBLite consensus disorder prediction 219 241 - -
Tpr1g0627 416 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 96 411 IPR005333 GO:0003700
Tpr1g0627 416 ProSiteProfiles TCP domain profile. 117 175 IPR017887 -
Tpr1g0627 416 MobiDBLite consensus disorder prediction 220 241 - -
Tpr1g0627 416 ProSiteProfiles R domain profile. 232 249 IPR017888 -
Tpr1g0627 416 PANTHER TRANSCRIPTION FACTOR TCP12 96 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0627 Tpr-Chr1 5238374 5240062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0627 117 278 TCP Transcription Factor Family AT1G67260 40.909 5.29e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tpr1g0627 TCP 1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0627 - - mtr:MTR_1g103380 417.927