Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0623 ATGATTTCATCCAATTACTGTTGTCATAAAATATTTGGCGCCGCCTGTGTTATTATCTCAGATAGGTCGATTGATTGTGTCCTTGCACAGTTGGTAAAGGGGCTTTCGTCGCAAGAATTTGCTGCCCGTAATGATTTGGTTCTTTCATTGCCAGAGAGGATCCAAGCTATCCCGGATGGGACCCCTGCTGCACCCAAACAAACTGGAGGTTGTGGAGCTTCTGCCTCACGTCCTGAAATTAAATTTGATTCAGATGGCCGATTTGAAGATGGATACTTTGAACAAACCAAAGAATCAAGTCAGTTTAGGGAGGAGTATGAAATGCCTAAAATAAAACAGGATCAAGGTTTGGATGTGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGGAATTTGATAAGCAAGTTCCACTGATGGATGAGATTGACACAAAGGTGGACAAGGCATCCTCTGACCTTAAATATACCAACGTTAAACTTAAAGACACAGTTACCCAGCTACGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTATTTGTACAAAATGGAATTCTATGTTGGGGCTTGA 618 0.4029 MISSNYCCHKIFGAACVIISDRSIDCVLAQLVKGLSSQEFAARNDLVLSLPERIQAIPDGTPAAPKQTGGCGASASRPEIKFDSDGRFEDGYFEQTKESSQFREEYEMPKIKQDQGLDVIAEGLDTLKNMAHDMNEEFDKQVPLMDEIDTKVDKASSDLKYTNVKLKDTVTQLRSSRNFCIDIVLLIIILGIAAYLYKMEFYVGA* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0623 205 Pfam SNARE domain 144 193 IPR000727 -
Tpr1g0623 205 PANTHER SYNTAXIN-73 30 198 - -
Tpr1g0623 205 PANTHER SYNTAXIN 30 198 IPR045242 -
Tpr1g0623 205 CDD SNARE_Qc 112 167 - -
Tpr1g0623 205 Gene3D - 110 168 - -
Tpr1g0623 205 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 107 169 IPR000727 -
Tpr1g0623 205 SUPERFAMILY SNARE fusion complex 101 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0623 Tpr-Chr1 5198917 5202313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0623 32 199 SNARE and Associated Proteins AT3G09740 74.118 4.92e-91 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0623 K08506 - gmx:100786529 275.018