Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0601 ATGGAACCGGCTGCGAGAATAGCTAGCCCTTCTGGGGTTGTGGTTAAGAATAGAAGTTCTTCGGGGTGTTTGATTGTTAGGAAGAAAGGAGATGGTTTGGGTGGTGGAGTTGGTGGTGGTTCCAGTTCCCGGAAGCAGTTTGAATCGAAGAAGGTGAGGAAAAGGCCGAAGGTGGATTCTAGTGATTCGGAATCAAGCGGAGAGTTACTTATGCCGTCTGCTAGGAGGATTGGCCCTGAGACTATTCGAGTTTGTAATAGTTTGAGTGCTCTTGAGCAAGGTCGTAATGTCGGTAGTGGTGAAATTAGTAGGAAGAGGGAGAGAATGGAGCAAATTAGGCGTAATGGGGATGGTATGGTTGAGGGGAATGGGTTGGAGAGAAGGGATAAGAAAGTTAAGTTGGATGTGTTTGATTTTGATGAATATGATGGTTTGGGTGCAGAAAGGATGAGAAGGAGGCAATTTGATAAAGATGGGGTTGGTTTAGGAGGAGGAGGAGGAAGGTTTATGGGAACAATGCATTCTGGTAGAGGTAGCATTGATAAGGAATTTGAAACTGGTTCAAGCAAACGCATTGTGGATAAGAGAAAAAATTCCTATTATGACAAGGGAAGTGGTTTGCATCTTGGAGATAGTGCTGACCGTAGTCGGATAAAGATGAAAAAGGATGGAACTCAGCGTCCTCTGCCCTTGATGAAGGAGAAGTTTAACTCTGACGAGTCCATTAGGGTCCAGGGGAAAAATGGTGTCTTGAAGGTGATGGTTAATAAGAAGAAGGTGGGTGGGTCAGTAGAACACTACGATCATCGCAAACCAGTAGAAAGCAGACAAAGTTTAAGGGCTGTGGGCACCTCTAAGAGGAATGTTCCAATCCGTCCTTCATCACATTTAGAAACAAAATCTGCTGAGAAACAGGGTTTACTTGTTAGGCCAGAGAAGAAACAGATAACAACAAAAAAATCCCTGTCAAGTAAGGAGGACAGTAAGGGCGATGAACAGGATTCAGATAACAACGACACATCAATGAATCTGGAAGTAAAAAATATTAAAGCTCACACATCTTCAAAAAAGATAACCTCTGAAAATGAACAGACTCCCGTACATGACAAGCTCCCAACTACAAAATCGAGTGAAGGGAAAATCAGGCGAGGTAGTGGCACAGAAAAGCAGAAACTACGGGAACAAATACGTGAGATGCTTCTGAATAAAGGCTGGACCATAGACTATCGCCCACGAAGGAATAGAGACTATTTAGATGCAGTTTACATTAATCCTGCAGGAACAGCTTATTGGTCCATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGATTGAGGATGATCAACAGGCCAAGGCCAAAGGGGAGAGTTCTTCTTTTGCTCCTATCGCTGATGATGTGCTCAGTCAATTGACAAGGAAAACTCGGAAGAAGATGGAGAAAGATTTGAAGATGAAGAAGAAGAAGCAAAGAGTTGATGACGGTGATAGTGGAAAAGAACGGCAGATTAAAAGAATTGCTGGCAAAAAGCATCTTATGAGTGGGATCGATAGTGACAGCAATGAAGATAAGTTAAGCTCCTTTGTCAAGCAAGGAAGTAAATCAATGAAAACAAAATTGACTGAAAATGCCGTTACTGGTGGTAGCTCTAAAAGCCAGAATGCTACAGTTGAAAAATCATTCTCTGAAAGTGATCCGCAGCTCCTACTTGGAAGGAAAAGTAGAAAACATGGACGGTGCACTTTATTAGTTCGTAGTTCTAACAAGGGATTGAATTCAGAACCTGATGACTTTGTTCCATATACAGGCAAACGAACAGTGCTTTCCTGGTTGGTTGACTCAGGGGTAGTACAAGTTAGTCAAAAGGTTCAATATCGCAGGAAGAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGAAGGCATTCACTGCGGTTGCTGTAGTAAGATCCTCACGGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCGCAGCCATATCAAAACATATATTTAGATTCTGGAGTTTCCCTTCTACAATGCCAAATAGATGCGTGGGAAAAACAAGAGAATTTTGGGAAAATCAGTTTCCATTCAGTAGATGTCGATGGTAATGATCCAAATGATGATACCTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGCTGTGATGGATGTCCATCAACATTTCATCAGAGTTGCCTGGATATACAGATGCTTCCCCCAGGGGAATGGCGTTGTCCAAATTGCACCTGTAAATTTTGTGGAATAGTCAATGGAACTATTGACAAAGAAGACGATGCCACTGTATATGCCCTACATACTTGTGACTTATGCGAGAAAAAATATCATGATTCCTGTACTAAGGATATAGGTGCCCTTCTTGCCGACTCCAATATGTCAGAGCATTCCTTTTGTGGAAAAAGCTGCAAAGAGCTTTTTGAACAATTGAAGAAGTACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACTTGGTGCCTTGTTCGTAGAACAGATGATGATTCTGAGGCAGCTAGCAGGGGAGTCACCCAGAGGGTGGAATGCAACTCCAAGTTGGCTGTCGCACTGACTGTGATGGACGAATGCTTTTTACCAGTTGTTGATAGGAGGAGTGGGATCAATATAATCCATAATAGTTTATATAATAGCGGGTCAAACTTCAGTCGGTTGAATTATACTGGCTTTTATACTGCTATTTTGGAGCGGGGTGATGAAATAATTTCTGCTGCATCTATCAGGTTCCATGGGACTAAGTTAGCAGAGATGCCATTCATTGGAACTCGCCATATATATAGGCATCAGGGAATGTGCCGCCGGCTTTTTACTGCCATTGAACTTGCTCTTTGCTCTTTGAAGGTTGAGAAACTGGTTATTCCTGCAATTTCTGAACTTGTTCTTACGTGGACAACAGTATTTGGCTTCACACATCTTGAGGAATCACTCAGGCAAGAAATGCGGTCATTGAATATGTTGGTATTCCCGGGTATTGATATGTTACAGAAGCTTCTAGCGGAGCAAGGAAAACTTGAGGATGCCGAGCAATTTGAGAATGAAGATGTTTCAATCAAGCCCACTCTGGTCAAAAGGTTAGATATCAATTCATCAGCCTTGCAAGATCCTCATGGAAGTGAGGATGCTAGTTCCAATCCTGCCAATAAGATTAACAATGAAAGCAGTGATGCTTCTCAAGATACAAGCAATCAAGGTTTGACTGGTAGGACTGTGTGCTCCAAATCTCATTCTGAGGAAAAATCATCTGAGGATGCTAGTTCCATTCCAGCCAACAAGATTAAAAATGAAAGCAGTGATGCTTCTCCAGATACAAGCAATCAAGGTTTGGCTGAAAAGACTGTGTGCTCCAAATCTCATTCTGAGGAAAAATCATCTGAGGATGCTAGTTCCAATCCAGCCAACAAGATTAAAAATGAAAGCAGTGATGCTTCTCAAGATACAAGCAATCAAGGTTTGGCTGGGAGGACTGTGTGCTCCAAATCTCATTCTGAGGAAAAATTATCTGATTCTGTTTCAGAATATCGCACTTCTCCTAATTCTAGTCATGGGGTACTCTACTCTATCTACGAAACCTGCCATGCCTTTGTCGACAAGAAAAATAAAATATTGACGTCTTCTCCTGTCAATGATCCATCATCCAAATGCCAACTCATCTCACCAAATGACATTTCTACAAATGGTCTTCCATCGGATCGTTTGGATTGTCCTGAAATTCCAGCTTCAGGTCAAGCAACTGCATGTTCTGACCTAGGTACGGTAGAAAACCGGGTTGAACCTGTTTCTGATGGGAAACCTCATGCTTTCACTGATATGAATTGTGATTCACCAGAGCTTGACCGAAAACCTGTGTCGGATTCTCAAGTGGCGGATAATGCTTTGTCTTTTAAAGAGTTAGATATGAATGATGCCCATGTTGAGGTACTTGAAGCTGGTCCTTTAGTGAATTCATCTCAGGCGAACAATACCAAAGAGAATAATGAAAGTGAGGATGTCTCTGGTTCTGTTCTTAAACATGCTATCACTGATATGAATTGTGATCCACCAGGACTTGACCAAAATCCTGTGTTGGATTCTCAAGCGGTGGACAATGCTTCGTCTTTGAAAGAGTTTGATATTAATGATGCCCATGTTGAGGTTCTTGAAGCTGGCCCTGTAGTGAATTCATCTCAGGCGAACAATACCAAAGAGAATAATGAAAATGAGGATGTCTCTGGTTCTGTTCATAAGCTTGCTATCACTGATACAAATAGTGATTCACCAGGACTTGACCAAAATCCTGTGTTGGATTCTCGAGTGGTGAACAATGCTTCGTCTCTTAAAGACTTGGATATGAATGATGTCCATGTTGAGGTTCTTGAAGCTGGTCCTTTAGTGAATTCATCTCAAGGGAACAATACGAAAGAGAATAATGAAGATGTAGATGTCTCTGGTTCTGTTCTTAATCATGCTTTCACTGATATGAATAGTAAATCACCGGGGCTCGACCAAAATTCTGTTTTGGATTCTCAAGTGGTGGATAATGCTTTGTCTTTTAAAGTGAATGATATGAATGGTGCCCATGTTGAGGTTCTTGAAGCCGATCCTTCAGTGAATTCGTCTCAGGGGAACAATACCAAGGAGAGTAATGAAAATGATGTCTCTGGTTCTGTTCTTAATCATGCTGGTGAGAGTTCCTTGCAGGTAAGATCTGATTTGAATGGTGAAATTGCATATGAGGGGGAAAAGAATTCACATTTGGACACAGAAGCTGCTTCAAATGAAATGCATTTGGATGAAACTGGCCTAAATGCTTCTAGTGATACTGCTGAAACTGACACAGCATTGAATGGTTGA 4875 0.4181 MEPAARIASPSGVVVKNRSSSGCLIVRKKGDGLGGGVGGGSSSRKQFESKKVRKRPKVDSSDSESSGELLMPSARRIGPETIRVCNSLSALEQGRNVGSGEISRKRERMEQIRRNGDGMVEGNGLERRDKKVKLDVFDFDEYDGLGAERMRRRQFDKDGVGLGGGGGRFMGTMHSGRGSIDKEFETGSSKRIVDKRKNSYYDKGSGLHLGDSADRSRIKMKKDGTQRPLPLMKEKFNSDESIRVQGKNGVLKVMVNKKKVGGSVEHYDHRKPVESRQSLRAVGTSKRNVPIRPSSHLETKSAEKQGLLVRPEKKQITTKKSLSSKEDSKGDEQDSDNNDTSMNLEVKNIKAHTSSKKITSENEQTPVHDKLPTTKSSEGKIRRGSGTEKQKLREQIREMLLNKGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLIEDDQQAKAKGESSSFAPIADDVLSQLTRKTRKKMEKDLKMKKKKQRVDDGDSGKERQIKRIAGKKHLMSGIDSDSNEDKLSSFVKQGSKSMKTKLTENAVTGGSSKSQNATVEKSFSESDPQLLLGRKSRKHGRCTLLVRSSNKGLNSEPDDFVPYTGKRTVLSWLVDSGVVQVSQKVQYRRKKRVMLEGWITREGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQIDAWEKQENFGKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWRCPNCTCKFCGIVNGTIDKEDDATVYALHTCDLCEKKYHDSCTKDIGALLADSNMSEHSFCGKSCKELFEQLKKYLGTKHELDAGFTWCLVRRTDDDSEAASRGVTQRVECNSKLAVALTVMDECFLPVVDRRSGINIIHNSLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFTAIELALCSLKVEKLVIPAISELVLTWTTVFGFTHLEESLRQEMRSLNMLVFPGIDMLQKLLAEQGKLEDAEQFENEDVSIKPTLVKRLDINSSALQDPHGSEDASSNPANKINNESSDASQDTSNQGLTGRTVCSKSHSEEKSSEDASSIPANKIKNESSDASPDTSNQGLAEKTVCSKSHSEEKSSEDASSNPANKIKNESSDASQDTSNQGLAGRTVCSKSHSEEKLSDSVSEYRTSPNSSHGVLYSIYETCHAFVDKKNKILTSSPVNDPSSKCQLISPNDISTNGLPSDRLDCPEIPASGQATACSDLGTVENRVEPVSDGKPHAFTDMNCDSPELDRKPVSDSQVADNALSFKELDMNDAHVEVLEAGPLVNSSQANNTKENNESEDVSGSVLKHAITDMNCDPPGLDQNPVLDSQAVDNASSLKEFDINDAHVEVLEAGPVVNSSQANNTKENNENEDVSGSVHKLAITDTNSDSPGLDQNPVLDSRVVNNASSLKDLDMNDVHVEVLEAGPLVNSSQGNNTKENNEDVDVSGSVLNHAFTDMNSKSPGLDQNSVLDSQVVDNALSFKVNDMNGAHVEVLEADPSVNSSQGNNTKESNENDVSGSVLNHAGESSLQVRSDLNGEIAYEGEKNSHLDTEAASNEMHLDETGLNASSDTAETDTALNG* 1625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 1605 1624 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 262 392 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 1586 1601 - -
Tpr1g0601 1624 SMART PHD_3 712 753 IPR001965 -
Tpr1g0601 1624 SMART PHD_3 754 813 IPR001965 -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 1541 1560 - -
Tpr1g0601 1624 Pfam PHD-finger 713 755 IPR019787 -
Tpr1g0601 1624 ProSitePatterns Zinc finger PHD-type signature. 713 752 IPR019786 -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 26 76 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 476 570 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 519 563 - -
Tpr1g0601 1624 CDD PHD2_CHD_II 713 752 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 1586 1624 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 1046 1194 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 486 503 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 373 392 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 1046 1086 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 1100 1128 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 278 295 - -
Tpr1g0601 1624 SUPERFAMILY FYVE/PHD zinc finger 698 754 IPR011011 -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 1540 1560 - -
Tpr1g0601 1624 ProSiteProfiles Zinc finger PHD-type profile. 710 755 IPR019787 -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 1143 1171 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 358 372 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 1 20 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 262 276 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 99 125 - -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 93 125 - -
Tpr1g0601 1624 Pfam Tify domain binding domain 635 685 IPR032308 -
Tpr1g0601 1624 PANTHER PHD FINGER FAMILY PROTEIN 1 1194 - -
Tpr1g0601 1624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 813 IPR013083 -
Tpr1g0601 1624 MobiDBLite consensus disorder prediction 297 336 - -
Tpr1g0601 1624 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0601 Tpr-Chr1 5045217 5054342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0601 12 1071 PHD Transcription Factor Family AT4G14920 48.114 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr1g0601 TDBD 2.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0601 - - mtr:MTR_1g103830 2300.78