Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0600 ATGAATAATGTTGCTGCAAGTTTTGATGCAGAGAACTCTGAGTTTATAGAAGTTGATCCTACTGGAAGATATGGAAGATACAATGAAATTCTTGGTAAAGGAGCTTCTAAGACAGTATATAGAGCTTTTGATGAGTATGAAGGAATAGAAGTAGCTTGGAATCAAGTAAAACTTTATGACTTTTTGAAAAATCCTCAAGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTCAAGACATTGAAGCACAAGAACATCATGAAGTTTTACACTTCTTGGGTTGATACTGCCAACAGACACATTAACTTTGTCACTGAGATGTTCACATCTGGGACTCTTAGACAGTACAGACTCAAACATAAGAGAGTTAACATCAGAGCTGTTAAGCATTGGTGCAGACAGATTTTGGAAGGTCTCCTCTATCTCCATAGCCATGATCCTCCTGTGATTCATAGAGATCTCAAGTGTGATAATATTTTCATCAATGGTAACCAAGGAGAAGTCAAAATTGGTGATCTTGGCCTCGCTGCAATTCTCCGCAAATCTAATGCTGTTCATTGTGTTGGAACACCTGAGTTTATGGCTCCAGAAGTGTATGAAGAAGATTACAATGAATTGGTTGACATATACTCTTTTGGAATGTGCATCTTGGAGATGGTCACCTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAAAAAGTTGTCTCTGGTAAGATGCCAGAAGCACTTAACAAAGTAAATGACACAGAGGTTAAGCAGTTTATAGAGAAATGCTTGGCAACCGTATCCCTTAGACTTTCAGCTAAGGAACTCTTAGATGACCCTTTTCTCCAAATTGATGATTGTGCATCTGACTTGAAAGAATTTCAGTATCTAAGAGATTGCTATGAAGTAACACCAGCAATTAGACAACCTATGAATGAAAATTATAGCATTCACAATAGCTTAATGAGTGTATACACTGATAATATTGGTGGTTATCAAGATGATTTTGAAACAAATGATTTTGACTTCTTTGATTGTGAAGACGATGATAATTTGGATGAAGTTGACACCTCAATCAAAGGTAGGAAAAGAGATGATGGCATCTTTCTGAGAATCAGAATACCAGATAAGGAAGGTCGGGTACGAAACATCTACTTCCCGTTCGACGCGGAGACTGATACTGCATTGAGTGTTGCGCATGAAATGGTAGCTGAGCTTGACATAACTGACCAAGATGTAACAAAATTAGCAAACATGATAGATAATGAAATTGCGACTTTAGTACCAGGATGGAAAAAGGCATCAAAAATAGATGAAATTTCAGAAGCTTCAAGTGCAAGTTTCTGCCTCAATTGTGCTGCAAACAATACCTTAGTTGATTATGTATCATCAAATAACCCATGTGCCAAGAATCTTCAATTCTTTCATTGTTCTAAAAATGGATGTGCAGCAGTTCATGGCCGGTTCGAGGAGATCACATACCAATATGAAGGATCTGCAAACAGTGCTACAGAAAATGCACCACCAAGTCAATCCAACGGCATTCATTTTGCCGATATCTGTGCTCAACGAGACGAATGCGAGCCAAATCATGAAGAGTTGAAAGATATACATTGTGACAAATATCACGAGGTATCAAAACTATCAACCATAAAGGAAGAGGAGAGAAGTGTTGATGTGGATGTGGATGACCAAAGTGATTTTAATACCAAAAAGCCTCCTACTAGCCCTGCAGCATCAGAATGTTCATTACTCTTGGACTATGAAAATGAAATAAGGCAAGAATTGAGATGGCTCAAAGCAAGGTACCAAATGCAGCTACGAGAACTTAGAGACCGTCAAATAGGTAGTACTAGACCAAAATCTACTTGCACATCTCCTGAAACTTTAAAATTAGAGCATGGAAAAGATGGATTTCTGAGACTAGCAGCAAAATTGTCACACATGAATATACAAAACAATAATAACTCGTTATTGAGGTATATGGCTTATAAGAAACATTTTCCATTTGATGATGACAAATGCAACACTTTAGCTGACCAAAGGATTCCAAATTATGTTTGTGAGATGAGTCAGCCTAGCAATTCTGAGCAAATGGTCACAGCCAAGGATTTCTTGGCAGGAGCTTTGCTTCCAAACTCGCTTCAAAGGGCAACCTCGCTTCCAGTTGATGCAGTTGATGTCTAG 2187 0.38 MNNVAASFDAENSEFIEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLKNPQDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRHINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILEGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAVHCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKMPEALNKVNDTEVKQFIEKCLATVSLRLSAKELLDDPFLQIDDCASDLKEFQYLRDCYEVTPAIRQPMNENYSIHNSLMSVYTDNIGGYQDDFETNDFDFFDCEDDDNLDEVDTSIKGRKRDDGIFLRIRIPDKEGRVRNIYFPFDAETDTALSVAHEMVAELDITDQDVTKLANMIDNEIATLVPGWKKASKIDEISEASSASFCLNCAANNTLVDYVSSNNPCAKNLQFFHCSKNGCAAVHGRFEEITYQYEGSANSATENAPPSQSNGIHFADICAQRDECEPNHEELKDIHCDKYHEVSKLSTIKEEERSVDVDVDDQSDFNTKKPPTSPAASECSLLLDYENEIRQELRWLKARYQMQLRELRDRQIGSTRPKSTCTSPETLKLEHGKDGFLRLAAKLSHMNIQNNNNSLLRYMAYKKHFPFDDDKCNTLADQRIPNYVCEMSQPSNSEQMVTAKDFLAGALLPNSLQRATSLPVDAVDV* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0600 728 SUPERFAMILY Protein kinase-like (PK-like) 28 283 IPR011009 -
Tpr1g0600 728 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0600 728 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 717 - -
Tpr1g0600 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Tpr1g0600 728 Coils Coil 593 613 - -
Tpr1g0600 728 CDD STKc_WNK 23 282 - -
Tpr1g0600 728 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 370 424 IPR024678 GO:0004674|GO:0005524
Tpr1g0600 728 Gene3D - 367 459 - -
Tpr1g0600 728 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 5 717 - -
Tpr1g0600 728 Gene3D Transferase(Phosphotransferase) domain 1 108 288 - -
Tpr1g0600 728 ProSiteProfiles Protein kinase domain profile. 25 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0600 728 MobiDBLite consensus disorder prediction 556 576 - -
Tpr1g0600 728 SMART serkin_6 25 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0600 728 Gene3D Phosphorylase Kinase; domain 1 9 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0600 Tpr-Chr1 5026152 5031027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0600 3 492 MAP Kinase Kinase Kinase AT3G22420 58.412 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Tpr1g0600 Pkinase 1.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0600 K08867 - gmx:100804179 1067.76