Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0572 ATGGCGGAACCAAAACAGGTTACTATTAGGCAACCAACAATTGCGGAACAAACTGAGAAGGCTTTTTTGAAGCAACCGAAAGTGTTTTTAAGCTCGAAGAAATCTGGAAAGGGGAAGAGACCTGGAAAGGGTGGTAATCGATTCTGGAAATCTGTTGGCCTTGTTTTTAAGCCTCCAAGAGATGCTATTGATAAAGATGAGAAGAACTTATTCTTTTCGATCTAA 225 0.4 MAEPKQVTIRQPTIAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSVGLVFKPPRDAIDKDEKNLFFSI* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0572 74 Gene3D - 1 72 - -
Tpr1g0572 74 PANTHER BNAANNG30090D PROTEIN 15 65 - -
Tpr1g0572 74 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 15 65 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tpr1g0572 74 Pfam Ribosomal_S17 N-terminal 17 65 IPR032440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0572 Tpr-Chr1 4761298 4761895 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0572 14 64 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 86.275 7.82e-17 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0572 K02949 - fve:101301636 84.7297