Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0569 ATGGATGAAGAGAAGAAACAAAACCACACTAAAACACTCATTGCTGCTCTCAACTTTCTCTCCCGCGACGTTCCTCTTCCTTCTCATCTTCTCAACTCCGTCTCTTCCATCTGTCATCACAGTAACGATGTCAATGGCGATGTAGGGAATTCTGGAGATGATTTAATAACAGATCTTCAAGATGCATTATCGGAACAGCGTACAAAATGTGCATCAGGTTTCAAGTTGGAGGAAGCGATGGAAACCCGTCATCAAAGTCAGATTCGGCATCGGTTAAATGAGCTTGAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTTTATGGACTGAAGTTAGCAGAGTTGCAGTCAAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTGAATGTGCATATCCTGACAGGAAATTGTTTGATTGGGGAATGATGAGATTGCGCCGTCCATCATATGGAATTGGAGATCCATTTGCCATGGATGCTGATGATCGATTAAGGAAGAGACGGGACTTTGAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAATCAAATAGAGACTACAAAAAGAAGGTTTTTTGCAGAAGTACTAAATTCTGTCCGCGAGATGCAATTACAATTTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTATCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCAACCCGAGCAGAGAAATTGAGATTCCAAGCCTTGAAGTCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTGGTAAATTTAGGAGCAGCCGTTCAACGTCAGAAGGACTTCAAACATTCAGATGGTATTGAACCCTTGGAAGATTCTGAAGCTGATTTACCTGAGTCAGATGCTTCAAAGAATGGAATTTCTAAGGAATCACCTGTTGATGAAGATATAGATGCGATAGATTCTGATCATAATGATGGGGATTCAAACGATTTGCTTGAAGGTCAGCGACAATACAATTCCGCCATACATTCAATTCAGGAAAAGGTAACTGAGCAACCGTCTATACTTCAAGGTGGAGAATTAAGATCGTATCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGGATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATACAAACAATTTCTCTCATAGCACATCTTTTTGAATACAAAGGTGTGACAGGGCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCGAACTGGATTATCGAATTCTCAACGTGGGCTCCTAGCATTAAAACTATTCTTTATGATGGACGGATGGATGAGAGAAAAGCCATAAAGGAAGAATATTCAGGAGAGGGGAAATTTAATGTTATGATTACACATTATGATCTTATAATGAGAGACAAAGCATTTCTGAAGAAAATTAAATGGAACTACTTAATTGTGGATGAAGGTCATCGGTTGAAGAATCATGAGTCTGTTCTAGCAAAAACATTGGACAATAGCTATAACATCCAACGGAGACTTTTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAACTATGGTCCCTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCCGTTCAAAATTTCGAGGACTGGTTCAATGCCCCTTTTGCAGACCGAGTTGATGTCTCTCTATCAGATGAAGAACAGCTATTAATCATTCGGCGTCTGCATCAAGTAATTAGGCCCTTCATATTAAGAAGGAAAAAGAATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTTTATTATCAACAAGTTACTGATGTAGGCAGAGTTGGTTTGGACAATGGTACTGGAAAATCGAAAAGTCTACAGAACTTAACGATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAGATGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTTGAAGTTTATTTAAGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACGAAAACTGAAGAAAGAGGCACTCTACTACGGAAATTTAATGCCCCTGACTCCCCATACTTTATGTTTCTCTTAAGCACCCGGGCAGGTGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGAATTGGACAAAAAAAGGAAGTTCGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGTATAGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACATCAACAGCCCAGGACAGACGAGAAATGTTGGAGGTGATTATGCGTCGAGGTTCAAGCTCACTTGGGGCAGATGTGCCTAGTGAAAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTCGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAACTACAAATCACGTCTCATGGAAGAGCGTGAATTGCCAGATTGGGTGTATGCTCCAATCCAAAAGGATGACAAGTCCAAAAGTTTCAATAGTGGTGTTACTGGAAAGCGGAAAAGAAAAGATGTGGTCTATGCTGATACATTGAGCGAATTACAATGGATGAAAGCTATGGAGAATGGGGAGGATATATCAAAGCTTTCAGCTAAAGGGAAAAGAAGAGAGTCAAGAGACTACCTCTCATCTGACAGCATAGCACAAGCCAGTGATAATACAGGTGCAGGTGAAAGCTTTTTAGGGCCAAGGACTAAAGTTGCGCCCACAGCAAATGAGAGAACCAGTGAAGACAGTTTCCATGTTACTCCTTCCTCAAAGAGATTCAAACCTGACAGAACAAATTTCCAGAAACATGCATACGAAGATGTCAGCGGAAGTGGTTTGAACCAGCATGTTTTCTCCTGGAATACTACTCACAAAAAGAAGAGATCAAGCCATCCTGGCCAGGGTTCATTATCTGATAGCAGAGGGCAGAGTTCAAATGGAAGAGCAAACTGGAATTGA 3258 0.4128 MDEEKKQNHTKTLIAALNFLSRDVPLPSHLLNSVSSICHHSNDVNGDVGNSGDDLITDLQDALSEQRTKCASGFKLEEAMETRHQSQIRHRLNELEELPSSRGEDLQTKCLLELYGLKLAELQSKVRSDVSSEYWLNVECAYPDRKLFDWGMMRLRRPSYGIGDPFAMDADDRLRKRRDFERLSRLEEVEKNQIETTKRRFFAEVLNSVREMQLQFQASLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDFKHSDGIEPLEDSEADLPESDASKNGISKESPVDEDIDAIDSDHNDGDSNDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLFEYKGVTGPHLIVAPKAVLPNWIIEFSTWAPSIKTILYDGRMDERKAIKEEYSGEGKFNVMITHYDLIMRDKAFLKKIKWNYLIVDEGHRLKNHESVLAKTLDNSYNIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYRCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGTLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEVIMRRGSSSLGADVPSEREINRLAARSDEEFWLFEKMDEERRQKENYKSRLMEERELPDWVYAPIQKDDKSKSFNSGVTGKRKRKDVVYADTLSELQWMKAMENGEDISKLSAKGKRRESRDYLSSDSIAQASDNTGAGESFLGPRTKVAPTANERTSEDSFHVTPSSKRFKPDRTNFQKHAYEDVSGSGLNQHVFSWNTTHKKKRSSHPGQGSLSDSRGQSSNGRANWN* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0569 1085 MobiDBLite consensus disorder prediction 1066 1085 - -
Tpr1g0569 1085 MobiDBLite consensus disorder prediction 297 330 - -
Tpr1g0569 1085 SMART helicmild6 717 801 IPR001650 -
Tpr1g0569 1085 Pfam SNF2-related domain 380 668 IPR000330 GO:0005524|GO:0140658
Tpr1g0569 1085 MobiDBLite consensus disorder prediction 980 995 - -
Tpr1g0569 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 858 IPR027417 -
Tpr1g0569 1085 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 691 852 IPR001650 -
Tpr1g0569 1085 Pfam Helicase conserved C-terminal domain 688 801 IPR001650 -
Tpr1g0569 1085 PANTHER ATP-DEPENDENT HELICASE BRM 5 1022 - -
Tpr1g0569 1085 MobiDBLite consensus disorder prediction 1050 1085 - -
Tpr1g0569 1085 MobiDBLite consensus disorder prediction 967 1025 - -
Tpr1g0569 1085 Coils Coil 889 912 - -
Tpr1g0569 1085 Pfam Snf2-ATP coupling, chromatin remodelling complex 895 954 IPR029295 GO:0042393
Tpr1g0569 1085 SMART SnAC_2 894 954 IPR029295 GO:0042393
Tpr1g0569 1085 CDD SF2_C_SNF 679 812 - -
Tpr1g0569 1085 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 389 555 IPR014001 -
Tpr1g0569 1085 Gene3D - 368 611 IPR038718 -
Tpr1g0569 1085 PANTHER SNF2/RAD54 HELICASE FAMILY 5 1022 - -
Tpr1g0569 1085 Gene3D - 612 832 IPR027417 -
Tpr1g0569 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 602 IPR027417 -
Tpr1g0569 1085 SMART ultradead3 373 566 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0569 Tpr-Chr1 4728433 4739762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0569 684 859 RAD5 or RAD16-like Gene Family AT5G43530 34.270 9.42e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr1g0569 SNF2_N 1.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0569 - - gmx:100786280 1855.49