Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0561 ATGGTTAGGGTTAGTGTCTTGAATGATGCTCTCAGGAGCATTTACAATGCTGATAAACTTGGGAAGCGCCAAGTTATGATTAGGCCATCATCAAAAGTCATTATCAAATTCCTCACGGTCATGCAAAAGCATGGATACATTGGGGAGTTCGAATACGTCGATGATCACAGGGCTGGAAAAATTGTTGTTCAATTGAATGGTAGATTGAATAAGTGCGGTGTTATTAGTCCTCGTTTCGATATCGGCGTCAAAGGGGTTGAAGGATGGACTGCAAGACTGCTTCCCTCAAGACAGTTTGGATATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGCTGGTGGTAAAGTGTTGGGTTTTTTCTACTAG 393 0.4224 MVRVSVLNDALRSIYNADKLGKRQVMIRPSSKVIIKFLTVMQKHGYIGEFEYVDDHRAGKIVVQLNGRLNKCGVISPRFDIGVKGVEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNAGGKVLGFFY* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0561 130 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Tpr1g0561 130 PANTHER BNAA02G06730D PROTEIN 1 130 - -
Tpr1g0561 130 ProSitePatterns Ribosomal protein S8 signature. 100 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Tpr1g0561 130 Gene3D - 1 69 - -
Tpr1g0561 130 Gene3D - 70 130 - -
Tpr1g0561 130 SUPERFAMILY Ribosomal protein S8 4 130 IPR035987 GO:0003735|GO:0005840|GO:0006412
Tpr1g0561 130 Pfam Ribosomal protein S8 7 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0561 Tpr-Chr1 4679688 4680991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0561 1 130 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 90.769 5.04e-88 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0561 K02957 - ini:109156677 248.825