Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0560 ATGTCACAACAAAATGTGTTTGATCATCCTCAACAACAACAACAATTTTTGGGCATGTCAAATAACAACACTTCTTCATCAAGTGATTTAGGAGGGAGTAATCAAAACCAAAATTCTGAAAACGAAATTCTTCGTTCCAATGGAGACCATCAACAACAAAAGAGGAGCAACAAGTGGCACAAACAAGAGCAAATACAAAAAATGGAAGCGCTCTTCAAGGAGTCTCCTCATCTTAATAGCGAACAAGTGGAACATTTGAGTCTTGAATTGGGTCTTACGCCTACGCAAATCAAACATTGGTTTCAAAACAAGCGCAACCAAGCTAAGGGAGAACAAGAGCGTCACAAAAACGAGCTTTTAAAAGATGAAAATGCGAAGCTTCGTGCTGAAAATGAGATGTATAAGGAGGAATTAAAAAATGCTACATGCTCAAAATGTGGAGGTCCAACTTCTATTGGTGAAAGATTTTGTAATTACGACCAGCTTAAAATTGAGAATGCTAGATTAAAAGCTGAGATAGAAGGACCTCACGCCATCTTATCTAAACGTTCTTGGATGTCTGCACCCGCATTTGAAATAGGGAATGGTAATCATATCTTTTCGAGCGTGGCAAAAGAATTGTGCTATGATGGTAATGACCCATTTGGATCACTCTGGATTCCTAATGATTGTGACAACCCAAAGATTATTGAACTTGCTGAGGTTTCTATGGAGGAACTCACAAAGATGACTCTTGTCGATTCCCCTTTATGGATCTCTACTAATGACTCTGAGATTCTAAATGAAGATGAATACATTAGAGTTTTCCCTAATGTATTAGGTCCAAAACTCACAAGATTAAAATCAGAATCTTCAAGAGAATCCGTGTTGGTTAATATGAATCATATTAACCTTGTTGAGACCATTATGGATGTGAATCAATGGTCAACTATGTTTAGTTGCATTGTTTCAAATGCAATGACCCTTAAAGTTTTATCGCCAAGTGAGTTAGGAAACTACAATGGAGTTGTGCAAGTGATGTCAGCTGATTTTCAAGTTCTTTCACCACTTGTTCCTGCTCGTAAAAACTATTTCGTTAGATATTGTAAGCAGCACCAACAACGGGTGTGGGCAATTGTTGATGTTTCGTTGGATCATTTGCGACCAAATAGTAATGCAACACCAAAAAGTCGAAGACGACCCTCTGGTTGTTTAATTCAAGAATTACCAAATGGTCACTCAAAGGTTACATGGGTTGAGCATGTAGAAGTGGGCGACAACACAATGTCACCCAATACATTTTATAAGTCTCTAATAACTTCTGGTTTTGCCTTTGGAGCTAAGCGATGGGTGGCATTATTATGTAGACAATGTGAACGTCTTGCTTATTCAATGACCACAGACATACCTGCAGGAGATCATTGTGTGATGAATGGTGTTCAAGGAAGGAAGAGTTTGTTGGATTTGGCTGAGAGAATGGAAGTGTGTTTTTCTAATGTTGCTGGTTCTTCTATAGCAAGTTGTTGGAATGTGCTTACATCTGATTCTGATGATGTGAGGGTCATGACCAGAACTATTATTGGTAAACCTGGAACATCCCCAAGTATAGTTGTTAGTGCTGGAACTTCTCTTTGGCTTCCAGTTCTTCCAAGGAGGCTTTTCAATTTTCTAGGAAACCAAAATTCAAGAAGTGAGTGGGATATTATTTCTATTGGGGCTACAATTAAAGAAATGGCACACATAACACATGGTCATGATCTTGATAATTATGTCTCTCTATTTCATATTAATAGTGAAAATTGCTACCAAAATAATATGATTGTGCTTCAAGATAATAACATTGATAGTACAGGCTCACATGTTATTTATGCTCCAATTGATATCAATGCTATGAATGTAGTTTTCAATGGTGGTGATCCAAATTTTCTTACCTTACTTCCCTCTGGTTTTGTTATTCTTCCCGACGGAGTTCGACTAAGCAATGGAGGACCTATGCTTAATGCCATTGGATCTGGAGGTTGTATACTGACAATTTCATTTCAAGCTTTAGTTGACTCAAGTCCAACAAGAAGAATAACAAATGGTTTCGTAAAAGAATTTGTTAATTTGATTAAGAATACAATTGAACGAATCAAAGTTGCATTGGCCTGTGACAGAACGCCTAATTGTAAAGATTAA 2157 0.3737 MSQQNVFDHPQQQQQFLGMSNNNTSSSSDLGGSNQNQNSENEILRSNGDHQQQKRSNKWHKQEQIQKMEALFKESPHLNSEQVEHLSLELGLTPTQIKHWFQNKRNQAKGEQERHKNELLKDENAKLRAENEMYKEELKNATCSKCGGPTSIGERFCNYDQLKIENARLKAEIEGPHAILSKRSWMSAPAFEIGNGNHIFSSVAKELCYDGNDPFGSLWIPNDCDNPKIIELAEVSMEELTKMTLVDSPLWISTNDSEILNEDEYIRVFPNVLGPKLTRLKSESSRESVLVNMNHINLVETIMDVNQWSTMFSCIVSNAMTLKVLSPSELGNYNGVVQVMSADFQVLSPLVPARKNYFVRYCKQHQQRVWAIVDVSLDHLRPNSNATPKSRRRPSGCLIQELPNGHSKVTWVEHVEVGDNTMSPNTFYKSLITSGFAFGAKRWVALLCRQCERLAYSMTTDIPAGDHCVMNGVQGRKSLLDLAERMEVCFSNVAGSSIASCWNVLTSDSDDVRVMTRTIIGKPGTSPSIVVSAGTSLWLPVLPRRLFNFLGNQNSRSEWDIISIGATIKEMAHITHGHDLDNYVSLFHINSENCYQNNMIVLQDNNIDSTGSHVIYAPIDINAMNVVFNGGDPNFLTLLPSGFVILPDGVRLSNGGPMLNAIGSGGCILTISFQALVDSSPTRRITNGFVKEFVNLIKNTIERIKVALACDRTPNCKD* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0560 718 MobiDBLite consensus disorder prediction 1 40 - -
Tpr1g0560 718 CDD homeodomain 54 112 IPR001356 GO:0003677
Tpr1g0560 718 Pfam START domain 232 453 IPR002913 GO:0008289
Tpr1g0560 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 41 709 IPR042160 -
Tpr1g0560 718 ProSiteProfiles START domain profile. 222 456 IPR002913 GO:0008289
Tpr1g0560 718 Coils Coil 110 144 - -
Tpr1g0560 718 Pfam Homeodomain 59 109 IPR001356 GO:0003677
Tpr1g0560 718 SMART START_1 231 453 IPR002913 GO:0008289
Tpr1g0560 718 Gene3D - 40 127 - -
Tpr1g0560 718 SUPERFAMILY Bet v1-like 500 705 - -
Tpr1g0560 718 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Tpr1g0560 718 SMART HOX_1 54 115 IPR001356 GO:0003677
Tpr1g0560 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 41 709 - -
Tpr1g0560 718 Gene3D - 234 444 IPR023393 -
Tpr1g0560 718 CDD START_ArGLABRA2_like 227 452 - -
Tpr1g0560 718 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Tpr1g0560 718 SUPERFAMILY Homeodomain-like 40 110 IPR009057 -
Tpr1g0560 718 SUPERFAMILY Bet v1-like 224 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0560 Tpr-Chr1 4674901 4678958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0560 37 711 Homeobox Transcription Factor Family AT4G04890 52.714 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr1g0560 START 2.6e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0560 K09338 - qsu:112016283 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g6114 2 74116186 74131086 Tpr1g0560 1 4674901 4678958 PCT