Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0558 ATGGAGCAGCAAGAAGAGATTGTTCCGAATATCACGGACGATGATGAAGCCTATGCTCAAGAGTTACAGTTTCAACAAACCCTTGCCGACTCACTCATCACCTCCACGCCGCCGCCGCCACCACCACCGCAACCGTCGCCGTCGTTACTCTGCGTCGCATCTTCTTCGTCAAAACCTGTGGATGTTGCAATTATCCTCAACGTAGAGAAGATAAAACTCGAGACCAATGAAGAATCAAATGAATCGTCTTCTTCTTCAATCATCATTTGCGAGATTTGTGCAGAAACAAAGAAGACTGAAGAAATGTTTAACAATCAAAGTTGTTCACATTCATTTTGTTCTGAATGTGTTATCAAACAAGTGGAAACAAAAATCCATGAAAAAATAGCAAATGTTTCTTGTCCTGGTTTGAATTGCAAAGGTGTGTTAGAGCTTGAATCTTGCATTTCATTGCTTCCTAAAGAATTGATTGATAAGTGGAATGATGCATTGTGTGAAGCACTTTTTTGTTCTGTTCCTAAATTTTACTGTCCTTTTAAGGATTGTTCTGCAATGTTGCTTGATGAAAATGAAGGTGTGGAAGATATTAGAGAATCTGAGTGTCCTTTTTGTCATAGGTTGTTTTGTGCAAGTTGTCATGTTCCTTGGCATCCTGGGATTGGTTGTGAGGAGTATCAGAAATTGAATGTGGATGAAAGAGGAAGTGATGATCTTGTTGTTAGAGAGCTTGCTAATCAGAAACAATGGAGAAGGTGTCCTACATGTAAATTCTATGTTGAAAAAAATGGAGGTTGTTTGCATATTACTTGCAGGTTATTAGAAAACATACAAAGATGCATTTGA 843 0.3879 MEQQEEIVPNITDDDEAYAQELQFQQTLADSLITSTPPPPPPPQPSPSLLCVASSSSKPVDVAIILNVEKIKLETNEESNESSSSSIIICEICAETKKTEEMFNNQSCSHSFCSECVIKQVETKIHEKIANVSCPGLNCKGVLELESCISLLPKELIDKWNDALCEALFCSVPKFYCPFKDCSAMLLDENEGVEDIRESECPFCHRLFCASCHVPWHPGIGCEEYQKLNVDERGSDDLVVRELANQKQWRRCPTCKFYVEKNGGCLHITCRLLENIQRCI* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0558 280 ProSiteProfiles TRIAD supradomain profile. 86 280 IPR044066 -
Tpr1g0558 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 170 IPR013083 -
Tpr1g0558 280 Gene3D - 219 275 - -
Tpr1g0558 280 Pfam IBR domain, a half RING-finger domain 164 222 IPR002867 -
Tpr1g0558 280 SUPERFAMILY RING/U-box 233 270 - -
Tpr1g0558 280 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 13 271 - -
Tpr1g0558 280 SUPERFAMILY RING/U-box 161 227 - -
Tpr1g0558 280 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 13 271 IPR031127 GO:0004842|GO:0016567
Tpr1g0558 280 MobiDBLite consensus disorder prediction 29 49 - -
Tpr1g0558 280 ProSiteProfiles Zinc finger RING-type profile. 90 135 IPR001841 -
Tpr1g0558 280 SMART ibrneu5 158 222 IPR002867 -
Tpr1g0558 280 ProSitePatterns Zinc finger RING-type signature. 108 117 IPR017907 -
Tpr1g0558 280 MobiDBLite consensus disorder prediction 34 48 - -
Tpr1g0558 280 SUPERFAMILY RING/U-box 85 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0558 Tpr-Chr1 4660519 4662074 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0558 90 271 C3H Transcription Factor Family AT2G19610 26.984 4.45e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0558 K11975 - jre:108998211 293.893