Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0556 ATGGAGCAACAAGACATTGTCCCTTATATCTCTGATGATGATGATGACAACTATGCTGAAGAGTTACAACTCCAACAAACCCTTATGGACTCACTCATCACTTCCAACTCTCATTCCCAAAATGCCCCATGTCTAGCATCTTCATCAAAACCCGTTGATGTTGGCCTTGTATACAACACAGAGCAGAAAAGGTTCGTAACCAAAGAAGAATCCTCTTCTTCAATCATCATTTGTGAGATTTGTGCAGAACCAAAAAAGACAGAGGAGATGTTTAAGAATCAAAGATGTTACCATTCCTTTTGTTCTGAATGTGTAATCAAACAAGTGGCAACAAAAATCCAAGACAAAATATCAATTGTGTCTTGTCCTGGTTTGAATTGCAAAGGTGTGTTGGACCTTGAATCTTGCAGGTCATTGCTTCCCAAAGAATTGATTGATAAGTGGAATGATTCATTGTGTGAGTCTCTTTTTATTACTGTTCCTAAATTCTATTGTCCTTTCAAAGATTGTTCTGCTATGTTGTTGGATGAGAATGAAGGAGGAGGAGAAGAAGAATATATTAGGGAATCTGAGTGTCCTTTTTGTCATAGATTGTTTTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGATTGGTTGTGAGGAGTATCAGAATTTGAATGTGGATGAAAGAGGGAGGGAAGATCTTCTTGTTAGGGAACTTGCTAATCAGAAGAAATGGAAAAGGTGTCCTAGATGCAGATTCTATGTTGAAAAAAATGAAGGCTGTTTGCATATCACTTGCAGGTGCAAATTTGAGTTTTGCTATGCCTGTGGAGAAACATGGACATCTACTCATGGTGGGTGCCAAAGAAGTTAA 858 0.3869 MEQQDIVPYISDDDDDNYAEELQLQQTLMDSLITSNSHSQNAPCLASSSKPVDVGLVYNTEQKRFVTKEESSSSIIICEICAEPKKTEEMFKNQRCYHSFCSECVIKQVATKIQDKISIVSCPGLNCKGVLDLESCRSLLPKELIDKWNDSLCESLFITVPKFYCPFKDCSAMLLDENEGGGEEEYIRESECPFCHRLFCARCHVPWHPGIGCEEYQNLNVDERGREDLLVRELANQKKWKRCPRCRFYVEKNEGCLHITCRCKFEFCYACGETWTSTHGGCQRS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0556 285 SMART ibrneu5 223 282 IPR002867 -
Tpr1g0556 285 SMART ibrneu5 146 213 IPR002867 -
Tpr1g0556 285 ProSiteProfiles TRIAD supradomain profile. 74 285 IPR044066 -
Tpr1g0556 285 Pfam IBR domain, a half RING-finger domain 232 282 IPR002867 -
Tpr1g0556 285 Pfam IBR domain, a half RING-finger domain 163 213 IPR002867 -
Tpr1g0556 285 SUPERFAMILY RING/U-box 224 282 - -
Tpr1g0556 285 ProSitePatterns Zinc finger RING-type signature. 96 105 IPR017907 -
Tpr1g0556 285 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 13 273 IPR031127 GO:0004842|GO:0016567
Tpr1g0556 285 SUPERFAMILY RING/U-box 150 218 - -
Tpr1g0556 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 156 IPR013083 -
Tpr1g0556 285 ProSiteProfiles Zinc finger RING-type profile. 78 123 IPR001841 -
Tpr1g0556 285 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 13 273 - -
Tpr1g0556 285 Gene3D - 211 285 - -
Tpr1g0556 285 SUPERFAMILY RING/U-box 73 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0556 Tpr-Chr1 4648044 4654104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0556 78 272 C3H Transcription Factor Family AT2G19610 29.000 9.51e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0556 K11975 - pop:18094363 327.405