Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0555 ATGGCATCATCCTCATCTTCATTTCTTGGTATCGACGACACTGTAGATGATTTCTACTTCTCTGTTGTCTCCGATGATGAAACCGACCCTGACTTCCCTGTCACCGATGACAGGTACGCTGAAGCATTACAGTTTCAAGAAACACTTTTAGCTTCTCTTATCACTTCTCACCGAGTCCCCTCCTCCTCCATGACCATGTCACCACCACCGCTATCATTACACTGGGTAGCATCTTCATCTCAAAATGATGAGTTACTGTTTGAGGAAACCCTTATGGCCTCCTCCTCCACATTACCACCGCCATTTGTAGCATCTTCATCAAAGGCTGTTGATGACACTGTCATCACCGAAAAAGCAGATCAATCTTCAATAATCGTTTGCGAGATTTGTACTGAAGCAAAAAGGACCCATGAAATGTTCAGGAACCAGAGATGTTACCATTCCTTTTGTTCCGAATGTGTCGTCAAACAAGTGTCAACAAAAATCCAAGATAACATAACAAATGTGTCTTGTCCTGGTTTGAACTGCAAGGGTTTGTTGGAGCTTGAATCTTGTAGGTCATTACTTCCAAAAGCTTTGATTGATAGGTGGGATGATGCATTATCTGAGGCTCTTTTACTTACTGTTCCTAAGTTCTATTGTCCCTTTAAGGATTGTTCTGCGATGTTGCTTGGTGAGAATGAAGGAGTGGGAGATATTAGGGAATCTGAATGTCCTTTTTGTCATAGGCTGTTTTGTGCAAGGTGTTATGTTCCTTGGCATCCTGGAGTTGGTTGTGAGGAGTACCAGAAAATGAATCCAGATGAAAGAGGGAGGGAAGATCTTCTCGTTAAAGAGCTTGCTAAACAGAAGAAATGGAAAAGGTGTCCCAGATGCAAGTTTTATGTTGAAAAAAGGGATGGCTGTTTGCATATCACGTGCAGGTGCAAGTTTGAGTTTTGCTATGCTTGTGGAGAAAGATGGACAGCTTCTCATGGTGGGTGCCAATGA 990 0.4263 MASSSSSFLGIDDTVDDFYFSVVSDDETDPDFPVTDDRYAEALQFQETLLASLITSHRVPSSSMTMSPPPLSLHWVASSSQNDELLFEETLMASSSTLPPPFVASSSKAVDDTVITEKADQSSIIVCEICTEAKRTHEMFRNQRCYHSFCSECVVKQVSTKIQDNITNVSCPGLNCKGLLELESCRSLLPKALIDRWDDALSEALLLTVPKFYCPFKDCSAMLLGENEGVGDIRESECPFCHRLFCARCYVPWHPGVGCEEYQKMNPDERGREDLLVKELAKQKKWKRCPRCKFYVEKRDGCLHITCRCKFEFCYACGERWTASHGGCQ* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0555 329 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 319 - -
Tpr1g0555 329 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Tpr1g0555 329 ProSiteProfiles Zinc finger RING-type profile. 127 172 IPR001841 -
Tpr1g0555 329 Pfam IBR domain, a half RING-finger domain 278 328 IPR002867 -
Tpr1g0555 329 Pfam IBR domain, a half RING-finger domain 211 259 IPR002867 -
Tpr1g0555 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 205 IPR013083 -
Tpr1g0555 329 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 319 IPR031127 GO:0004842|GO:0016567
Tpr1g0555 329 SUPERFAMILY RING/U-box 122 204 - -
Tpr1g0555 329 SUPERFAMILY RING/U-box 199 264 - -
Tpr1g0555 329 ProSiteProfiles TRIAD supradomain profile. 123 329 IPR044066 -
Tpr1g0555 329 SMART ibrneu5 269 328 IPR002867 -
Tpr1g0555 329 SMART ibrneu5 195 259 IPR002867 -
Tpr1g0555 329 SUPERFAMILY RING/U-box 270 328 - -
Tpr1g0555 329 Gene3D - 256 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0555 Tpr-Chr1 4645531 4647328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0555 127 318 C3H Transcription Factor Family AT2G19610 30.348 5.28e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0555 K11975 - qsu:112001859 348.977