Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0544 ATGCATTACTCTACGCTATTCCCAATTTTCATCATAACCTTCACATTATTCTTCAACCATTACCACACCACAGTTTCTGCAAATATATATTACTCACCACTACCTTACCATGAATGTTCAACCAACAACAACTCACCAAACAGCACATACCATATCAACCTTAAAACTCTTTTGTCATGGCTTTCATCCAATGCCACACCTACTACTCACGTATACAACACTACCATTACAGAATCCAACACCAATAACACTATCTATGGCCTCTTCACATGCGAAATCAAAGACAACGATCCTAACTGTAAAAACTGCATTACAAATGCAGCCAAACAGATAGCAGAACTTTGTCCAATGTCAAAAGAAGCCATAATATACGCTGCTTATTGCATGGTTCGTTATTCTAATAATTATTTCTTTGCCACAGTGGAAGAGAGTCCTAAACTACACTTCATGAGCGAACAGAACTATGTTGGGCCACAGGTTAGTCGATTCAACAAAATACTTTGGGATACTATGAATGATATCAGAAATTTAACAGCAAATGTTACTAATGGATCCTTGAAGTATGCTTATAAATCAGTTAACATCACAGACACAGATAACAAAACGCTGTATGCAATGGGAAATTGCATTCCATACCTTTCTTCAGATGACTGTAGTCGGTGTCTCGGTGATGCCATGGCAGAAATTCAAAACTCTTGTTGTAAAGGAAAAACTGGAGGCAGAATTTACTTCCCTAGTTGCGCAATAAGATTTGAACTTTATTCATTTTACGATCCACTAGCTTCGACGACAATCCAGCCGCCGCAACTATCTACTGGCACCTTGGCATCACCAGGAGAAAAAAGGAAAAAGTCAATTATATCAGTGCTAGTTGTGGTTTTCCCGGTTGTTGCGACACTGGTGCTTTTATGTTGGGGTTGCAGCTGTTTTATAAGAAGGAAACAGAGAAAAAATCAAGAGACTATTCTCAAAGAAAGCTGTAATGAGTTAAATCAATGTAAAAAAGGTGTTTCTGATAAAAACAGAAACTCAAATCTATTTGGTGCAGTTGGGGATGATGTTGCTATTTTGGAATCCTTGAGGTTTGGTTTAGGCGAAATTGAATCTGCAACAAACAAATTTGCTAAAGAAAATATGATTGGAGAAGGTGGGTTTGGAGAAGTTTATAAGGGTGTACTTTCCAACGGGGAAGAGGTAGCTGTGAAGAGGCTTTTGGGAAGCTCTAAGCAAGGTGCAAGAGAATTTAAGAATGAGGTTCTTGTTATAGCTCGACTTCAGCACAAAAATCTAGTGAAATTACAAGGATTTTGTCTTGATGAACAGGAAAAGATACTCATATATGAATATGTTCCTAACAAGAGTCTTGATTACTTTTTATTTGATCTCCTAAAGAGAAGACAATTAGATTGGAATGAAAGACACAAGATTATTGGAGGAATTGCTCGAGGAATTCTTTATCTTCACGAGGATTCGCGCCTTAAAATTATACACCGTGATCTAAAACCTAGTAATGTTTTGCTAGACAGTAACATGGATCCAAAAATCTCAGATTTCGGTATGGCAAGAATTGTTGTGACCGATAATATTGAAGAAAATACACATAGAATTGTTGGGACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGCCAATTCTCAGTGAAATCTGATGTGTTTAGTTTTGGAGTAATGGTACTGGAGATTATCAGTGGAAAAAGGAAATATTCTTCCTCTGAATCAGATTGTGTCGATATACGGAAATATGCTTGGACAAAATGGAAAAACCAAACAACATTGGAACTATTGGATCCTCAGATGGAAGGATCATTGTTTCAAAATGATATAATAAGATGCATCCATATTGCATTATTATGCGTACAGGAAGACCCTAATGATAGACCCACAATGGCAAAAGTTGTTTCCTTCCTCAACAATCCTTCGGTGGATTTGCCATTACTTACAGAACAGTCATTTTTCATGAAAAGAACAATAGAGGACAATATGGTCAGGGGATTGGACTCTATGGGTAATTCAAACTGTGAACTGACAGTGAGTGAAATTTACCCTCGATAG 2076 0.3728 MHYSTLFPIFIITFTLFFNHYHTTVSANIYYSPLPYHECSTNNNSPNSTYHINLKTLLSWLSSNATPTTHVYNTTITESNTNNTIYGLFTCEIKDNDPNCKNCITNAAKQIAELCPMSKEAIIYAAYCMVRYSNNYFFATVEESPKLHFMSEQNYVGPQVSRFNKILWDTMNDIRNLTANVTNGSLKYAYKSVNITDTDNKTLYAMGNCIPYLSSDDCSRCLGDAMAEIQNSCCKGKTGGRIYFPSCAIRFELYSFYDPLASTTIQPPQLSTGTLASPGEKRKKSIISVLVVVFPVVATLVLLCWGCSCFIRRKQRKNQETILKESCNELNQCKKGVSDKNRNSNLFGAVGDDVAILESLRFGLGEIESATNKFAKENMIGEGGFGEVYKGVLSNGEEVAVKRLLGSSKQGAREFKNEVLVIARLQHKNLVKLQGFCLDEQEKILIYEYVPNKSLDYFLFDLLKRRQLDWNERHKIIGGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMDPKISDFGMARIVVTDNIEENTHRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKRKYSSSESDCVDIRKYAWTKWKNQTTLELLDPQMEGSLFQNDIIRCIHIALLCVQEDPNDRPTMAKVVSFLNNPSVDLPLLTEQSFFMKRTIEDNMVRGLDSMGNSNCELTVSEIYPR* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0544 691 Pfam Salt stress response/antifungal 153 254 IPR002902 -
Tpr1g0544 691 Pfam Salt stress response/antifungal 39 134 IPR002902 -
Tpr1g0544 691 SUPERFAMILY Protein kinase-like (PK-like) 360 661 IPR011009 -
Tpr1g0544 691 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 691 - -
Tpr1g0544 691 Gene3D Phosphorylase Kinase; domain 1 337 449 - -
Tpr1g0544 691 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 13 691 - -
Tpr1g0544 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Tpr1g0544 691 Gene3D Transferase(Phosphotransferase) domain 1 450 651 - -
Tpr1g0544 691 ProSiteProfiles Protein kinase domain profile. 374 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0544 691 Gene3D - 146 256 IPR038408 -
Tpr1g0544 691 Gene3D - 32 137 IPR038408 -
Tpr1g0544 691 Pfam Protein kinase domain 375 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0544 691 ProSiteProfiles Gnk2-homologous domain profile. 32 137 IPR002902 -
Tpr1g0544 691 ProSiteProfiles Gnk2-homologous domain profile. 143 256 IPR002902 -
Tpr1g0544 691 CDD STKc_IRAK 380 646 - -
Tpr1g0544 691 ProSitePatterns Protein kinases ATP-binding region signature. 380 402 IPR017441 GO:0005524
Tpr1g0544 691 SMART serkin_6 374 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0544 Tpr-Chr1 4562812 4566031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0544 4 668 Receptor kinase-like Gene Family AT4G05200 44.395 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr1g0544 Pkinase 7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0544 - - gmx:100793219 719.539