LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g0542	ATGGGTTCCTTCCATTTTCTGTTTTTACTTCCCATATTCTTTTCCCTCTTTGTTCATTGCTCTCCATCTCCCATCATACAAGCTGCTATTGATAAAGGGACACATGCTTACTATAACTGCACAAGGAACAGCACTTCTGCAACCTATAACGCTTACCGTTCCAACATCAAAACACTCCTTGATTTGCTCTCCTCCAAAAGTAGTAACAATGCTAGATACTACAACGCCACAGTTGTAAGCGATAACACTGTTGACACCGTCTACGGTCTCTTCCTTTGTAGTAGATACCTTGACCCAAAAATCTGTCAATCGTGCGTGATAGAAGCAGCCAAACTCATATCATCTCTGTGCACCACAGCAAAAGAAGCCATAGTTTGGTACACAGTATGCTATGTGCGATATTCTGATAATAACTTCTTTTCCACTGTGGAGAAAACTCCAGAAATTTCTTTCATGAATGATAAGGATTATGTCGGTCAGGTTGGGCGCTTCAACAACATCCTGTGGGATATGTTGAACAATTTGAGAATAGAAGCAGCAAATGCTTCTGCGAAGTTGGCTGACAAGTCAGCGAACCTCACAGAAAACCAAAAACTATATGGCTCTGTTTGGTGCCTCCCATACCTATCTGCAGAGAACTGCAGCTGGTGTCTTAGTGATGCAATAGCAGAAGTTCCAACCAGTTGCTGCAGAGGAAAATCTGGAGGCTCAATATTTTATCCCAGTTGCGGTCTTAGATTTGAATTATATCCATTCCACAAGACACACGGCGATATTTCTTGGGTGCCATCTCCACCCACAAGTCCACGGCCATTAGCTCCACCAGGAAATGGAAAACAGAAGACACTAACAATATTTGAGATCGTTGTTCCAATTGTTGTCTCACTGGTGCTTTTAGTCTTGGGATGCTGTTTCTTTCTATATAGAAAAGAAAGAACGAATCAGCATGATATTCTCAAAGAAAGCTTTGGGAATGAAAGTACCACTTTGGAGTCCTTGCAATTTGACTTTGCCAAAATTGAAGCAGCAACAAACAGATTTGCTGCAGAAAACAGGATAGGCAAAGGTGGATTTGGAGAAGTCTACAAGGGAATTCTTTCAGATGGACAAGAAATTGCTGTGAAGAGGCTTACAAGAAGCTCTGTACAAGGTGCAGTAGAGTTTAAAAATGAGGTTCAAGTTATAGCTAAGCTTCAACACAGAAATCTAGTGAGATTACTAGGATTTTGTTTGGAAGATGAAGAAAAGATACTTATCTATGAGTATGTGCCAAACAAGAGTCTTGATTACTTTTTATTTGATCCCCAGAAGCGAAAATTATTATCTTGGTCTCAACGTCAGAATATCATCAAAGGAATTGCCCGTGGAATTCTTTATCTCCATGAAGATTCTCGTCTCAAAATAATACATCGTGATCTGAAACCTAGCAATGTCTTGTTAGATAGTAATATGAATCCAAAAATATCAGATTTTGGCATGGCTAGAATTGTATCAATAGATCAAATTGAAGAAAGTACATGCACGATTGTAGGGACATATGGCTATATATCTCCAGAATACGCAATGCACGGATACTTTTCTGTAAAATCCGATGTGTATAGTTTCGGTATCATGGTTCTAGAGATTATTAGTGGAAAGAGGAAAGGTTGTTCTTCTGAATTAGAGCGTGTTGATGATATCCGGAGATATGCTTGGATAAAATGGGCAGAGCAAACACCACTTGAACTATTGGATCCTAATATGGAAGGAAGTTATTCCCAAGAAGAAGTCATCAAGTACATCCACATTGGTTTGTTATGTGTCCAGGAAAATCCAGATGACAGACCTACAATGGCAACAATTGCATTCTACCTCAACAGCCCTTCAATCAACTTGCCATCCCCTCTTGAACCACCGTATTTTAAGCGTAGTGGAATTGAAGAAAACATGGTCTCCAACAACGCATTGGATAGTAATAGTATCAGTGATTCAATCAACGGACTCTCTGTTACTAAGTTCTTTCCTCGTTAA	2010	0.3965	MGSFHFLFLLPIFFSLFVHCSPSPIIQAAIDKGTHAYYNCTRNSTSATYNAYRSNIKTLLDLLSSKSSNNARYYNATVVSDNTVDTVYGLFLCSRYLDPKICQSCVIEAAKLISSLCTTAKEAIVWYTVCYVRYSDNNFFSTVEKTPEISFMNDKDYVGQVGRFNNILWDMLNNLRIEAANASAKLADKSANLTENQKLYGSVWCLPYLSAENCSWCLSDAIAEVPTSCCRGKSGGSIFYPSCGLRFELYPFHKTHGDISWVPSPPTSPRPLAPPGNGKQKTLTIFEIVVPIVVSLVLLVLGCCFFLYRKERTNQHDILKESFGNESTTLESLQFDFAKIEAATNRFAAENRIGKGGFGEVYKGILSDGQEIAVKRLTRSSVQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEDEEKILIYEYVPNKSLDYFLFDPQKRKLLSWSQRQNIIKGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVSIDQIEESTCTIVGTYGYISPEYAMHGYFSVKSDVYSFGIMVLEIISGKRKGCSSELERVDDIRRYAWIKWAEQTPLELLDPNMEGSYSQEEVIKYIHIGLLCVQENPDDRPTMATIAFYLNSPSINLPSPLEPPYFKRSGIEENMVSNNALDSNSISDSINGLSVTKFFPR*	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g0542	669	ProSiteProfiles	Gnk2-homologous domain profile.	34	139	IPR002902	-
	Tpr1g0542	669	SMART	serkin_6	347	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g0542	669	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	10	669	-	-
	Tpr1g0542	669	Gene3D	Phosphorylase Kinase; domain 1	308	422	-	-
	Tpr1g0542	669	Gene3D	Transferase(Phosphotransferase) domain 1	423	624	-	-
	Tpr1g0542	669	Coils	Coil	172	192	-	-
	Tpr1g0542	669	ProSiteProfiles	Gnk2-homologous domain profile.	145	252	IPR002902	-
	Tpr1g0542	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	468	480	IPR008271	GO:0004672\|GO:0006468
	Tpr1g0542	669	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	10	669	-	-
	Tpr1g0542	669	CDD	STKc_IRAK	353	619	-	-
	Tpr1g0542	669	SUPERFAMILY	Protein kinase-like (PK-like)	330	636	IPR011009	-
	Tpr1g0542	669	Pfam	Salt stress response/antifungal	40	136	IPR002902	-
	Tpr1g0542	669	Pfam	Salt stress response/antifungal	160	250	IPR002902	-
	Tpr1g0542	669	ProSitePatterns	Protein kinases ATP-binding region signature.	353	375	IPR017441	GO:0005524
	Tpr1g0542	669	ProSiteProfiles	Protein kinase domain profile.	347	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g0542	669	Pfam	Protein kinase domain	349	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g0542	669	Gene3D	-	148	252	IPR038408	-
	Tpr1g0542	669	Gene3D	-	33	139	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g0542	Tpr-Chr1	4551245	4555939	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g0542	13	669	Receptor kinase-like Gene Family	AT4G05200	43.881	0.0	561

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tpr1g0542		Pkinase	1.6e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g0542	-		-	mtr:MTR_1g105585	1001.12