Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0541 ATGGCCTCTTTCCACCCCGTCTTTCTCTTTATCCTTGTTTGCTTCATCGATTTTGTAACCACTAAAGCAAAGAATGATAACGTTATCTCGGTGTCTTGCTCAAACATCAACAAAACCACTCCAAATAGCCCCTTCCAATTGAATCTCAAGACCCTCCTCACAGATTTATCTTCAAACGCCACTGCTAACAAAGAATTCTACAACACTATAGTAGAAGGCAAAAACCACTCGTCTGATACAGTCTATGGTCAGTTTATGTGCAAGGGTGATGTTCCTGCTCATCTCTGTAGTCAGTGCGTCACAAACTTAACTCGTTACAATTTATCCTCAGACCCATTGAACAATGATTGCTCCTTTTCCAAAGAGGTGGTGCTTCAGTACGAGGAGTGCATGGTCCGATATTCCAACAAATCTTTCTTCTCCCCTACTCACTTTAGTTCACATTCTAGTGAGTGTTTGTCTCTTAATGTGTCAAACCAGGCAGTATTCGAGCGTTTAGTTTTCAAAACCTTGAACGGTGTGGCAGATGAGGCAGCCAATTTTTCAATTGGCGTCAAGAAGTATGCCACAAAGGAAGCAACCATATCTGAATTTCAACCCCTATATTTTCAAGCTCAGTGCACACCAGACCTGTCACCACAAGATTGCAGGAAATGTCTGAATGTTACCATAACGGACGTTCTTCAGAGCTGTAAACTTTTTAACATAGGGGTAGGGAAGTCTGAAACTTACAATTGTTACATCAAATATGACGTGTACCCTTTCTATCGCCCCAGTAATACCCCAACACCACAAGATGTCGTTCCAGCTTCCAATACAATTGATTCAAAATACTCACAGCATCCAGCTTATCTTTCCCACAATTGTACAAGCAATGAAACCATGAACAACAATTTTCTATCAAATCTCAGAACACTATTCTCTTCATTGTCTTCCAATGCCATCAGAACCAGTTTCTTCAAGACAACTGTCGACACGGTCAATGGCCTCTTTATGTGCCGCGGTGATATCTCCCTCTCCCCTACCCTCTGTCAGTTATGTGTCCAGGATGCAACCAAAAGAATATCCTCAGAGTGTCCTACCTCCAAAGAGGCTATAATTTGGTACGATAAATGCTTACTTCGCTATTCCTATCATTCTCTTCTTTCAGGTATCAATACAAGTGCTCCAAAATTTCACCAATTCAATTTGGCTTTAAACCCGAACCTGCTGCAAAGCTTCGCCACTTGGAAACTAGCAGATATTTTATATGAAGTGAATAATTTGCAAACAGGAGAGAGTACTACTAAGAATTACGAAACAAGATTGGTAAAATTGAATGATCATCAAACAATTTACACTCTTGCTCAATGTACGCCAGATCTATCTGATTGGGATTGCAGTACCTGCCTGCAAAACATTTTCCAAAACGAAATTCCTTGGAGTTGTTTGGCAAGTCCAGAAGGAAAAATTCTATATCCTAGCTGCTATATGATGTTTGGATTGTCCCAATTCTACAACAATGATCATGAACCGGAGGTGTTTGGGAAAGGTAGTCCTACTCCGACAACAAAAGATGATGAAAAAAGAAGGTCGCAAATGATGATAGTTTCTGTTCCGATCATCCTTTCAACATTGCTTCTAACTTTTTCCTACTATCTGCTAAGGAAAAGAGCAAGGAAGAACAGTTATAAGGCATTAATCCTAAAAGAAAATTTTGGTCTAGAAAGTACAACTTTGGAGGGTTTGCAATTCGAAATGGCCGTAATTAGAACAGCAACAGACAACTTTTCACATGAAAACAAAATTGGTGAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTTCTGATGGACGACACATAGCTGTTAAGAGGCTTTCATCAAGTTCAAAGCAAGGCATCGAAGAGTTCAAGAATGAAATTTTATTGATAGCCAAGTTACAACAAAGAAATCTGGTGGCATTAATAGGTTTTTGCCTAGAAGAGCAAGAGAAGATTCTTATCTATGAATATGTCCCAAATGGGAGCCTTGATTACTTTTTATTTGACACTCGACAGCAAAATTTAAGCTGGGATGAACGTTACAAAATTATAGGTGGAACGGCTGCAGGAGTTCTATATTTGCATGAATATTCCCGTCTCAAAGTTATACACCGTGATCTGAAACCTAGTAATGTTCTATTAGATGAAAATATGAATCCAAAAATATCAGATTTTGGTATGGCGAGAATTGTTCAAATAGATCAAGATCGTGGACAAACCAACAAAATTGCTGGAACATGGGGTTACATGTCCCCAGAGTATGCAATGCTTGGACAATTTTCGGAGAAGTCGGATGTTTTTAGTTTTGGTGTCATTGTTTTAGAGATTATTACTGGAAAAAGAAATATAAATCCTTATGAATCACTTCATGTTACTGAAGGCCTCACAAGTTATGTATGGAGACAATGGAAAAATGAAACTCCATTAATCATATTGGATCCAAATATTGAAAATTATTCTCATATTGAAGTTATTAAGTGCATACAGATAGGTTTGTTATGTGTTCAAGAAAATCCAAATGTCAGGCCTACAATGGCATCGGTTATTTCATATCTTAAGAGTCGTTCACCAGAACTATCATCTCCACAAGAACCAGCATTTTTCATACATGACAGAATGAATGAAGAAGTAACAGCACAAATGGAATCAAGTTCTACCAATAATTTTATATCATTTTCTGTCAACCATATGTCTATAAGTGAATTTTATCCTCAGCGATAG 2745 0.3821 MASFHPVFLFILVCFIDFVTTKAKNDNVISVSCSNINKTTPNSPFQLNLKTLLTDLSSNATANKEFYNTIVEGKNHSSDTVYGQFMCKGDVPAHLCSQCVTNLTRYNLSSDPLNNDCSFSKEVVLQYEECMVRYSNKSFFSPTHFSSHSSECLSLNVSNQAVFERLVFKTLNGVADEAANFSIGVKKYATKEATISEFQPLYFQAQCTPDLSPQDCRKCLNVTITDVLQSCKLFNIGVGKSETYNCYIKYDVYPFYRPSNTPTPQDVVPASNTIDSKYSQHPAYLSHNCTSNETMNNNFLSNLRTLFSSLSSNAIRTSFFKTTVDTVNGLFMCRGDISLSPTLCQLCVQDATKRISSECPTSKEAIIWYDKCLLRYSYHSLLSGINTSAPKFHQFNLALNPNLLQSFATWKLADILYEVNNLQTGESTTKNYETRLVKLNDHQTIYTLAQCTPDLSDWDCSTCLQNIFQNEIPWSCLASPEGKILYPSCYMMFGLSQFYNNDHEPEVFGKGSPTPTTKDDEKRRSQMMIVSVPIILSTLLLTFSYYLLRKRARKNSYKALILKENFGLESTTLEGLQFEMAVIRTATDNFSHENKIGEGGFGEVYKGILSDGRHIAVKRLSSSSKQGIEEFKNEILLIAKLQQRNLVALIGFCLEEQEKILIYEYVPNGSLDYFLFDTRQQNLSWDERYKIIGGTAAGVLYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVQIDQDRGQTNKIAGTWGYMSPEYAMLGQFSEKSDVFSFGVIVLEIITGKRNINPYESLHVTEGLTSYVWRQWKNETPLIILDPNIENYSHIEVIKCIQIGLLCVQENPNVRPTMASVISYLKSRSPELSSPQEPAFFIHDRMNEEVTAQMESSSTNNFISFSVNHMSISEFYPQR* 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0541 914 Pfam Salt stress response/antifungal 289 377 IPR002902 -
Tpr1g0541 914 Pfam Salt stress response/antifungal 158 252 IPR002902 -
Tpr1g0541 914 Pfam Salt stress response/antifungal 416 493 IPR002902 -
Tpr1g0541 914 Pfam Salt stress response/antifungal 33 136 IPR002902 -
Tpr1g0541 914 SUPERFAMILY Protein kinase-like (PK-like) 573 860 IPR011009 -
Tpr1g0541 914 Pfam Protein tyrosine and serine/threonine kinase 593 859 IPR001245 GO:0004672|GO:0006468
Tpr1g0541 914 ProSitePatterns Protein kinases ATP-binding region signature. 596 618 IPR017441 GO:0005524
Tpr1g0541 914 Gene3D Transferase(Phosphotransferase) domain 1 666 874 - -
Tpr1g0541 914 Gene3D Phosphorylase Kinase; domain 1 551 665 - -
Tpr1g0541 914 Gene3D - 282 380 IPR038408 -
Tpr1g0541 914 Gene3D - 25 139 IPR038408 -
Tpr1g0541 914 Gene3D - 145 255 IPR038408 -
Tpr1g0541 914 Gene3D - 407 498 IPR038408 -
Tpr1g0541 914 SMART serkin_6 590 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0541 914 ProSiteProfiles Gnk2-homologous domain profile. 392 498 IPR002902 -
Tpr1g0541 914 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672|GO:0006468
Tpr1g0541 914 ProSiteProfiles Gnk2-homologous domain profile. 281 381 IPR002902 -
Tpr1g0541 914 ProSiteProfiles Gnk2-homologous domain profile. 145 255 IPR002902 -
Tpr1g0541 914 ProSiteProfiles Gnk2-homologous domain profile. 27 139 IPR002902 -
Tpr1g0541 914 CDD STKc_IRAK 596 861 - -
Tpr1g0541 914 ProSiteProfiles Protein kinase domain profile. 590 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0541 914 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 515 904 - -
Tpr1g0541 914 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 277 503 - -
Tpr1g0541 914 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 267 - -
Tpr1g0541 914 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 277 503 - -
Tpr1g0541 914 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 18 267 - -
Tpr1g0541 914 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 515 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0541 Tpr-Chr1 4545285 4550286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0541 279 913 Receptor kinase-like Gene Family AT4G05200 41.541 6.70e-160 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr1g0541 PK_Tyr_Ser-Thr 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0541 - - gmx:100785282 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0541 1 4545285 4550286 Tpr2g6107 2 74052359 74056752 PCT