Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0540 ATGCTCTCAAAAACACAAAATCATCCATCCATGGCTTCCAACATGGAAGTACTAGTCTTCTTCCTCCTAACCCTTTTAATCCTCTTCCTCAATTCTTCAACTTCTTATGCACAAGACCCTAATTTTCTCCATCAAGTTTGTTCAAAAAGCAGCTTCACATCAAACAGCACCTACCAAACAAACCTCAAAACTCTCTTATCTTCCTTATCTTCCACAGCAACCAATCAAAACACCCTATTCTTCAACAACACCATAGCCGGAAAAAATAATTCAGAAACAGTTTATGGACTATTCATGTGCAGAGGTGACATCCCTTCAAACCTATGCGCATCATGCGTTGGAAACGCAACACAAAGACTTTCCACAAACAAAGAATGCTCTGTTTCAGTTACAGCAGTTATGTGGTACAATGAATGCATGGTTAGGTATTCCGACAACTCATTCTTTTCGACAGTGGCGGAAGGACCTGGCTATGTTCTCGCAAGTCCCACCAATATGACAAACCAAGAAAGTTTCAATCGATTGTTGTATGATACGTTGAACAAAACTGCAGATGAAGCTGCTGCTAATTCTTTGAAGAAATTTGCTACAAGGGAAGGGAAAATATCTATATTTCAGAACCTTTATTGTTTAGCTCAGTGTACACCTGATATTGATGAAAGAGAGTGCAGAAGTTGTCTTTATAGTTTGATAAATTCTGATCTTCCAAGGTGTTGTGCAGGAACGCAAGGTGGAAGAGTTTTATATCCTAATTGTGTTATCAGGTTTGAAATTTACCCTTTTTATCGTTCTCTTACTGCCCCAACGCCAGCTCCTGCAGGACTAGTTCCATCACCAAATTCGGCAGTTGGTCGTGAGATTACCACTTTAGAGGGGTTGCAATTCGATTTAGCTACTATTGCTACAGCAACAAACAATTTCTCACCCGAGAACAAGATTGGAAAAGGTGGATTTGGAGAAGTTTACAAGGGCACTCTTGGTGATGGGCGAGATATAGCTGTGAAGAGGCTTTCAACAAGTTCCACACAAGGTTCAATTGAGTTCAAGAATGAGATTTTATTGATAGCCAAGCTACAACATAGAAACCTTGTGGCCTTGATAGGTTTTTGTCTAGAAGAGCAAGAGAAGATTCTCATTTACGAATATGTCCCGAACGGAAGTCTTGATTATTTTCTATTCGGGGGTCAACAACAAAAGTTAAGCTGGTCTGAGCGCTACAAAATTATAGAAGGAACTGCTTTAGGAGTTCTATATTTACATGAGTATTCTCGATTTAAAGTTATACACCGTGATCTCAAACCTAGTAATATTTTATTAGATGAACATATGAACCCTAAAATCTCAGATTTTGGTATGGCTAGAATTGTTAACATTGACCAAGATCGTGGTAACACTAGCAGAATTGTGGGAACATATGGTTATATGTCTCCGGAATATGCAATGCTCGGAAAATTCTCTGAAAAATCAGATGTATTTAGTTTTGGAGTAATGGTTATAGAGATAATCACCGGAAAAAAGAATGCAAACTCTTACGAATCAAATGCTAAAGGCCTTTTGAGCTATGTTTGGAGACAATGGAATGATGAAACATTGTTGACTGCAGTTGACCCAAGTATTAAAGAAAAATATTCTCAAATTGAAGTTATAAAATGCATTCAAATTGGGTTATTATGTGTTCAAGAAAATCCAAATGCTAGACCTACAATGGCAACAGTTGTTTCATATCTTACTAGGCACTCAATTGAACTGCCATTTCCACAAGAACCATCATTTGTGTTGCATGGTGGTGGAATGGATAAAAATATTGTTAGGCATCAGCAGGAGTCAAGCTCAGGTCTATCTGCTAGTAGTTCTAATCCATTTTCAGTTAATGACATGTCAATCAGTACATTTTACCCTCGTTAA 1905 0.3795 MLSKTQNHPSMASNMEVLVFFLLTLLILFLNSSTSYAQDPNFLHQVCSKSSFTSNSTYQTNLKTLLSSLSSTATNQNTLFFNNTIAGKNNSETVYGLFMCRGDIPSNLCASCVGNATQRLSTNKECSVSVTAVMWYNECMVRYSDNSFFSTVAEGPGYVLASPTNMTNQESFNRLLYDTLNKTADEAAANSLKKFATREGKISIFQNLYCLAQCTPDIDERECRSCLYSLINSDLPRCCAGTQGGRVLYPNCVIRFEIYPFYRSLTAPTPAPAGLVPSPNSAVGREITTLEGLQFDLATIATATNNFSPENKIGKGGFGEVYKGTLGDGRDIAVKRLSTSSTQGSIEFKNEILLIAKLQHRNLVALIGFCLEEQEKILIYEYVPNGSLDYFLFGGQQQKLSWSERYKIIEGTALGVLYLHEYSRFKVIHRDLKPSNILLDEHMNPKISDFGMARIVNIDQDRGNTSRIVGTYGYMSPEYAMLGKFSEKSDVFSFGVMVIEIITGKKNANSYESNAKGLLSYVWRQWNDETLLTAVDPSIKEKYSQIEVIKCIQIGLLCVQENPNARPTMATVVSYLTRHSIELPFPQEPSFVLHGGGMDKNIVRHQQESSSGLSASSSNPFSVNDMSISTFYPR* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0540 634 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 283 601 - -
Tpr1g0540 634 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 30 268 - -
Tpr1g0540 634 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Tpr1g0540 634 Pfam Salt stress response/antifungal 164 258 IPR002902 -
Tpr1g0540 634 Pfam Salt stress response/antifungal 47 145 IPR002902 -
Tpr1g0540 634 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 30 268 - -
Tpr1g0540 634 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 283 601 - -
Tpr1g0540 634 SUPERFAMILY Protein kinase-like (PK-like) 294 603 IPR011009 -
Tpr1g0540 634 SMART serkin_6 307 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0540 634 Gene3D - 158 261 IPR038408 -
Tpr1g0540 634 Gene3D - 39 148 IPR038408 -
Tpr1g0540 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Tpr1g0540 634 ProSiteProfiles Gnk2-homologous domain profile. 40 148 IPR002902 -
Tpr1g0540 634 Gene3D Transferase(Phosphotransferase) domain 1 383 583 - -
Tpr1g0540 634 CDD STKc_IRAK 313 578 - -
Tpr1g0540 634 ProSiteProfiles Protein kinase domain profile. 307 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0540 634 Pfam Protein kinase domain 309 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0540 634 ProSiteProfiles Gnk2-homologous domain profile. 154 261 IPR002902 -
Tpr1g0540 634 Gene3D Phosphorylase Kinase; domain 1 279 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0540 Tpr-Chr1 4536242 4541873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0540 11 634 Receptor kinase-like Gene Family AT4G05200 44.802 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr1g0540 Pkinase 3.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0540 - - vun:114191422 817.764