Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0539 ATGATTATCAAAGTATCTAAGATATTTATGCTTAGCACACTTATCTTAATCTTAATTATTACCATAACAGAAACTTCGGCATCTGTGTTCAACAATGCTACTTGCACAAACAACAAAACATTTACACAAAACAGTACTTTTCATTCAAATCTCAAAACCCTTCTCTCATCACTTTCTTCTAATGTAACAAATGATGTTAGATTCTTCAACACAACATCAGGAAAAGGTTTAGACAAAGTCTATGGTCTTTCTATGTGTCGTGGAGATGTTCCATTTGCTTTATGTAGAGAGTGTATTGGTTTTGCAACACTAACAATACCAAAATATTGTCCTTCTTCAAAAGAAGCTGTGATTTGGTATAACGAGTGTTTGTTAAGATATTCATATAGATTCATCTTCTCAAAAATGGAAACTTTACCAAGATATAAGATTGAGATTCCACTGGGGGATCCTGTTTTGTTACAAAGTAAAGGGTTTTATGCTGCTTTAGGATCTGTTTTGAATGTGCTTCCAAATGAAGCTGCAGTTTCTATTGGTAGTTTCAACAAATATGCTGTTAAACAAGAAAATGCTTCTGTTAGTGTGACGCTTTACGGTCTTGCTCAGTGTACACCGGACTTGTCAGCCGGGGATTGTAGGCGGTGTATTGAGGATGCGGCCGCGGAGTTTCCTAAGGCTTGTTGTGGAGGTAGCATAGGGGAAACTATTTTGTTTCCAAGTTGTTTTGTTAGATATGAGACTTATCCGTTTTATCTGCATTCTGGAACATCGGCATCAATAGCAACTTCAAATAAGGGGGGAAGAAATATTTCAACACATTTGATTGCCATCATTGTTGTCTTGGTTGTCATTTTGGTGGTGATTTTTTGCATTGGCGGCTATTTCTTATGGATAAAAGCGAAGAAGAGACGCAAGGCTAGTCACAAAGAAAACCTTGGGCTTGAATTTAGTAACTCCGAGTCCTTGGAATTTGATTTTGCTACAATTGAAATAGCAACAAACAATTTTTCTGATGATAGCAAAATTGGCAAAGGGGGATATGGACAAGTCTACAAGGGAACACTTCCTAATGGACAAGAAATAGCTGTGAAGAGACTGTCGAAAACTTCTGGTCAAGGAGCAGAAGAATTCAAAAATGAAGTGATGTTAATAGCCAAACTTCAACACAGAAATTTGGTGAGGTTAATAGGATTTTGCCTTGAAGATCAAGAAAAGATACTTATCTATGAATATGTGCCTAACAAAAGTCTTGATCACTTCCTATTTGATTCTCGGAAGCAAAAACAATTAACTTGGCCTGAACGGTATAATATCATAAAAGGAATTGCTCGAGGAATTCTTTATCTTCATGAAGATTCTCGTCTCAAGATTATACATCGCGATATTAAACCAAGCAATGTACTTCTAGATAACAACATGATTCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTAGATATAGAGCAAATTCAAGGACACACAAATAGAGTTGTGGGGACATATGGTTACATGTCTCCAGAATATGCAATGCACGGACAATTTTCAGTGAAGTCCGATGTTTTCAGTTTTGGAGTTATGGTTCTCGAGATTATTAGCGGAAAAAAGAATTCATGTAGTTTTGAATCATGTCGTGTTGATGATCTCTTGAGTTATGCTTGGAACCAGTGGAAAGGTGAATCTCCATTTGAAATGCTGGATCCAGTTATGCAAGAATCTTATGCTCCAAATGAAGTAGAAAAATGTGTGCAAATTGGTTTATTGTGTGTCCAAGAAAATCCAGATGAGAGGCCTACAATGGGAACTGTTGTTTCATATCTTACAAATGTCTCAGCTGATATGCCATTTCCCATGGAACCAGCATTTTTCATGCACGGCAGAACCAGAAGACATTCAGGCTATTCAGCTGAACGTGAATCATATTCAGACTTTACACTAAAAAAATATTGGAAAGAAATGATTGGGTGGAGACAATCAGTCTAA 1983 0.3676 MIIKVSKIFMLSTLILILIITITETSASVFNNATCTNNKTFTQNSTFHSNLKTLLSSLSSNVTNDVRFFNTTSGKGLDKVYGLSMCRGDVPFALCRECIGFATLTIPKYCPSSKEAVIWYNECLLRYSYRFIFSKMETLPRYKIEIPLGDPVLLQSKGFYAALGSVLNVLPNEAAVSIGSFNKYAVKQENASVSVTLYGLAQCTPDLSAGDCRRCIEDAAAEFPKACCGGSIGETILFPSCFVRYETYPFYLHSGTSASIATSNKGGRNISTHLIAIIVVLVVILVVIFCIGGYFLWIKAKKRRKASHKENLGLEFSNSESLEFDFATIEIATNNFSDDSKIGKGGYGQVYKGTLPNGQEIAVKRLSKTSGQGAEEFKNEVMLIAKLQHRNLVRLIGFCLEDQEKILIYEYVPNKSLDHFLFDSRKQKQLTWPERYNIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNNMIPKISDFGMARMVDIEQIQGHTNRVVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKKNSCSFESCRVDDLLSYAWNQWKGESPFEMLDPVMQESYAPNEVEKCVQIGLLCVQENPDERPTMGTVVSYLTNVSADMPFPMEPAFFMHGRTRRHSGYSAERESYSDFTLKKYWKEMIGWRQSV* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0539 660 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Tpr1g0539 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Tpr1g0539 660 Gene3D - 28 131 IPR038408 -
Tpr1g0539 660 Gene3D - 153 250 IPR038408 -
Tpr1g0539 660 CDD STKc_IRAK 342 609 - -
Tpr1g0539 660 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 9 634 - -
Tpr1g0539 660 Pfam Salt stress response/antifungal 157 248 IPR002902 -
Tpr1g0539 660 Pfam Salt stress response/antifungal 35 128 IPR002902 -
Tpr1g0539 660 Gene3D Phosphorylase Kinase; domain 1 297 411 - -
Tpr1g0539 660 SUPERFAMILY Protein kinase-like (PK-like) 321 636 IPR011009 -
Tpr1g0539 660 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Tpr1g0539 660 ProSiteProfiles Protein kinase domain profile. 336 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0539 660 SMART serkin_6 336 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0539 660 Pfam Protein tyrosine and serine/threonine kinase 340 607 IPR001245 GO:0004672|GO:0006468
Tpr1g0539 660 ProSiteProfiles Gnk2-homologous domain profile. 141 250 IPR002902 -
Tpr1g0539 660 Gene3D Transferase(Phosphotransferase) domain 1 412 615 - -
Tpr1g0539 660 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0539 Tpr-Chr1 4520704 4528114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0539 6 642 Receptor kinase-like Gene Family AT4G05200 43.202 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr1g0539 PK_Tyr_Ser-Thr 4.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0539 - - gmx:100791642 956.436