Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0538 ATGAATTCTTATTCCACCATGTCTTTGAATTCCTTCAACCTGTTTTTTCTGTTCAGCCTCATAACCTTTCTCCTCATTAGCTCAACTACTAACGCACAAAATCCAACTTTTCTCTACCAAGTTTGTTCAGAGAATGATACCACCACCAGCACCTACAAATCAAACCTCAGAACCCTTTTTTCTTCATTATCTTCCAACGCTACCAAAGAATTCTACAACACCACAGTCACAAGCAGAACTGCCTCAAACACGGTATACGGTCTATACTTGTGCAGAGGCGACGTTTCCTCTTCCGGCTGCCAACAATGTGTGACAAACGCAACACAAAAACTATCAACAGACTGCTCCTCATCCAAACGAGCTGTAATCTGGTATGACGAATGCATGGTTCGATACTCCAACAACTCTTTTTTCTCAACCGTGGCTACAAGTCCCGCTATTTTCTTGATGAACACCGTGAATATCACGAACCAGGCAAGCTTCATGCGTTTATTGTTTGATACCATGAATGAATCAGCTGATAAAGCGGCGAATTCTTCTGTTGGTGCTAAAAAATACGCAACAAATGAAGCTAGCATATCTAGTTTTCAGACACTTTATTGTTTGGCTCAGTGTACAGATGATTTATCACAGCAAGACTGCAGCACGTGTCTTAGTGATGTTATAGGTGCTCTTCCTCAGTGTTGTAATGGAAAGCAAGGAGGGAGAGTTCTGGTTCCTAGCTGTAATATTAGATATGAATTGTACCCTTTTTATCGAAACCTTACTCCTTCACCATCACCATCGCCTTCAGTAGCACCAGGGCTTGTTCCTCCAACAACCAATCCTAATTTGGGAGGAAGTAGTGGGATCTCTTCAGGGACAATTGTTGCAATTGTGGTTCCAATTTCCGTGGCCATGCTGCTATTTATCGTGGGACTTTGTTTCTTAAGTAAAAGACTACGGAAGAAGAAGCGTGACTCTGCACAAGATCCGAAAACTGAAACTGATATTAGCACCGTGGAATCCTTGAGATTTGATTTGAGTACGCTTGAAGAAGCCACAAACAAATTCTCGGAAGCTAATAAGCTAGGTGAAGGTGGATTTGGCGTGGTTTACAAGGGCTCGCTTCCAAGCGGACAAGAAATAGCTGTCAAGAGACTCTCTAAAAACTCAGGACAAGGTGGAGAGCAATTTAAGAATGAAGTTGAGTTGGTTGCCCAGCTTCAACATAGAAATTTAGCTAGGCTTCTAGGATTTTGCTTGGAAGGAGAAGAAAAGATACTTGTTTATGAATATGCAGCCAACAAAAGCCTTGACTATATTCTTTTTGATCCTGAAAAACAAAGGCTGTTGGATTGGACAAGGCGTTACAAGATAATTGGAGGGGTTGCTCGAGGCATTAAATATCTTCACGAAGATTCTAGGCTTAAAATTATTCATCGTGATCTCAAAGCTAGCAACGTATTGTTGGATGGAGATATGAATCCAAAAATATCCGACTTTGGCATGGCAAAATTATTCGGAGTGGATCAAACTCAAGGAAATACCAGTAGAATAGTAGGCACATATGGTTACATGTCTCCGGAGTATGCAATGCATGGAGAGTTCTCTATTAAGTCTGATGTATACAGTTTTGGAGTCCTAGTTATGGAGATTATAAGTGGCAAGAAGAACAGTTCTTTCTATGAAACAGGTGTTGCTGAGGATTTAGTGTGCTATGCCTGGAAACTTTGGAAGAATGGAACACCCTTGGAATTGGTTGACCAGACAGTAACAGAATCCTATACTCCAAATGAAGCTATCAGATGCATCCATATTGGTTTACTATGTGTTCAAGAAGATCCAGAAGATAGACCTACAATGGCAACAGTAGTGCTCATGTTAGATAGTTTCAGTGTTACGCTACCGGTACCTAAGCAGCCTGCATTTTTTCTACACAGTGGAAGTGTTCCAAACATGCCGACGATACAAATCAGTCAATCTGAATCTACTACCAATTGA 1983 0.4105 MNSYSTMSLNSFNLFFLFSLITFLLISSTTNAQNPTFLYQVCSENDTTTSTYKSNLRTLFSSLSSNATKEFYNTTVTSRTASNTVYGLYLCRGDVSSSGCQQCVTNATQKLSTDCSSSKRAVIWYDECMVRYSNNSFFSTVATSPAIFLMNTVNITNQASFMRLLFDTMNESADKAANSSVGAKKYATNEASISSFQTLYCLAQCTDDLSQQDCSTCLSDVIGALPQCCNGKQGGRVLVPSCNIRYELYPFYRNLTPSPSPSPSVAPGLVPPTTNPNLGGSSGISSGTIVAIVVPISVAMLLFIVGLCFLSKRLRKKKRDSAQDPKTETDISTVESLRFDLSTLEEATNKFSEANKLGEGGFGVVYKGSLPSGQEIAVKRLSKNSGQGGEQFKNEVELVAQLQHRNLARLLGFCLEGEEKILVYEYAANKSLDYILFDPEKQRLLDWTRRYKIIGGVARGIKYLHEDSRLKIIHRDLKASNVLLDGDMNPKISDFGMAKLFGVDQTQGNTSRIVGTYGYMSPEYAMHGEFSIKSDVYSFGVLVMEIISGKKNSSFYETGVAEDLVCYAWKLWKNGTPLELVDQTVTESYTPNEAIRCIHIGLLCVQEDPEDRPTMATVVLMLDSFSVTLPVPKQPAFFLHSGSVPNMPTIQISQSESTTN* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0538 660 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 643 - -
Tpr1g0538 660 ProSiteProfiles Gnk2-homologous domain profile. 143 251 IPR002902 -
Tpr1g0538 660 SMART serkin_6 351 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0538 660 ProSiteProfiles Gnk2-homologous domain profile. 34 137 IPR002902 -
Tpr1g0538 660 CDD STKc_IRAK 357 623 - -
Tpr1g0538 660 Gene3D - 34 137 IPR038408 -
Tpr1g0538 660 Gene3D - 145 251 IPR038408 -
Tpr1g0538 660 Pfam Salt stress response/antifungal 154 249 IPR002902 -
Tpr1g0538 660 Pfam Salt stress response/antifungal 42 134 IPR002902 -
Tpr1g0538 660 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Tpr1g0538 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Tpr1g0538 660 Pfam Protein tyrosine and serine/threonine kinase 354 620 IPR001245 GO:0004672|GO:0006468
Tpr1g0538 660 Gene3D Phosphorylase Kinase; domain 1 311 426 - -
Tpr1g0538 660 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 643 - -
Tpr1g0538 660 ProSiteProfiles Protein kinase domain profile. 351 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0538 660 SUPERFAMILY Protein kinase-like (PK-like) 336 650 IPR011009 -
Tpr1g0538 660 Gene3D Transferase(Phosphotransferase) domain 1 428 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0538 Tpr-Chr1 4518761 4522735 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0538 17 641 Receptor kinase-like Gene Family AT4G05200 54.160 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr1g0538 PK_Tyr_Ser-Thr 6.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0538 - - gmx:100789354 916.761