LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g0532	ATGATTTCTTCCATCTGGCTTCTGCTGTCCCTTCTAATTCCTTTTTTTATCACACTAAAATCCAATGCCGATGCTCAACTAGTTTTCCGCTACCATGAATGTAACCAAGATCGTGGAAACTTCTCCGATAGCAGTGCCTACAAGAACAACCGTAACACCGTATTACAACAAATATATTCCAACAAAACAATAGACTACGGTTTCTTCAATTTCTCGTACGGCAATATATCTGACAAAGTATACGCAATTGGACTCTGTCGAGGTGATATAGAACCAGTTGATTGCCTTGGTTGCCTAACAACTTCCGCAGCACTTCTCACAGATCGATGTCCAATACAAAAAGAAGCAATTGGTTACTACGACTCGTGCATCTTACGCTATTCAGACCATCAAATTTTTGGCGTGATGGAAACTAAAACCAGTTATTTTTACAACATCGAACCCAAGACAGTGGTCGATGATGCATTTAGGCAAAGACTTAATGTCTTGTTGGATGAACTTAAAAACAAGGCTGCGGATGGTGACTCGCGTATGAAGTTTGCCGAAAAGAGTGTTAAAGTAATTGATAAATCAAGTAGTAATGAGACTATATATGGTCTGGTACAGTGTACACCAGATTTGACAAAGCAAGATTGTACTAGATGTTTGGATCCTGTCTCCCAAGGTTTTTCAAGCATCTGTGAAGATAGGAAAGGTTGTTTGTATCTTGGACCAAGTTGTTCAGTTAGATATGATATCATTCCATTTTTTAAATCCTTAAGAGGAGTTAAAAATGCAGGGTCGCCAGCACCACAGCCACGGCCACAGCCTTCAGAAACAATTGTTAATGCTCATGCACTTCCTCCTACAACTGCGAAAGGAAACAGAAGGAAATTAAGAACGGTCATCGCTATCGTTGTAGTAGTTGTGGCCGGCATACTGCTTATTGTTGCCATCGCAATCGTTGTACGCATTTATTTTGAAAGGAGAAAACCAAGACCCCAATATACGCCTGAGTTTGAAGGCCAAGAAAAAAATGAAGATGAATTTGAATCTGAAGCTGGTAATGATCTTAAAGTTGGTGATTTGTTGCAATTTGACTTTGAAACCGTCAGATTAGCTACAAGCAACTTCTCTGATGCAAATAAGCTTGGTCAAGGTGGATTTGGAACTGTTTATAAGGGTATGCTTTCTGATGGACAAGATATTGCTATCAAAAGGTTGGCCAATAATTCTAAGCAAGGAGAAACAGAATTTAAGAATGAAGTGTTGCTAACAGGGAAGCTTCAACATAGAAACTTAGTTAAGCTACTAGGTTTCTGTTTACAAAGAAGAGAAAGACTACTAATATATGAGTTTGTCACTAACAAAAGTCTTGATTATATCATATTTGATCCAATCAAGCGTGCAAACTTGAGTTGGGAAAGACGCTACAAAATCATAAGAGATATTGGTCGTGGTCTTCTATATCTTCATGAAGATTCTCGATTACAAATTGTTCATCGTGATCTCAAAACAAGTAACATTTTGTTAGATGAAGAGATGAACCCAAAAATTACCGATTTTGGCATTGCGAAATTGTTTGATGCCAATCAAACGGATGGCATGACTAAGACCGTTGTTGGAACTTTTGGATATATGGCTCCAGAGTATATTAGACATGGACAATTTTCAGTCAAGTCAGATGTGTTCAGTTATGGTGTAATCATTTTAGAAATTGTCTGTGGCCGGAAAGTCATCGAGAATCGTGGGGGGGAGAATATAGAGGATCTATTAAGCATTGCTTGGAGAAATTGGAAAGCAGGAACAACTTCAGATATTGTAGATCCATTATTAGAACAAGGTTTTAATAAGAATGAAAAATTGAGAAGCATCCATGTTGGATTACTTTGTGTTCAAGAAGATATAGATGTTAGACCAACTATGAGTTCTGTTTTACAAATGCTTAGTAGTACCACTTACCCACTTCCCGAGCCTTCTGAACCTCCATTTTTAATGCAACCCAAAAGGGCATTATCTATAGCATTAAGTGGCCAATATACAGGTTCCACAAAGTCAACTGATTCAGGATCAGGAAGTCAATTTACTCAAGGATCAACAAATATTTCCACACCTCTTGACTTGGAAACGGTGTTCGAGCATATGTTGAGAAGATGA	2136	0.3816	MISSIWLLLSLLIPFFITLKSNADAQLVFRYHECNQDRGNFSDSSAYKNNRNTVLQQIYSNKTIDYGFFNFSYGNISDKVYAIGLCRGDIEPVDCLGCLTTSAALLTDRCPIQKEAIGYYDSCILRYSDHQIFGVMETKTSYFYNIEPKTVVDDAFRQRLNVLLDELKNKAADGDSRMKFAEKSVKVIDKSSSNETIYGLVQCTPDLTKQDCTRCLDPVSQGFSSICEDRKGCLYLGPSCSVRYDIIPFFKSLRGVKNAGSPAPQPRPQPSETIVNAHALPPTTAKGNRRKLRTVIAIVVVVVAGILLIVAIAIVVRIYFERRKPRPQYTPEFEGQEKNEDEFESEAGNDLKVGDLLQFDFETVRLATSNFSDANKLGQGGFGTVYKGMLSDGQDIAIKRLANNSKQGETEFKNEVLLTGKLQHRNLVKLLGFCLQRRERLLIYEFVTNKSLDYIIFDPIKRANLSWERRYKIIRDIGRGLLYLHEDSRLQIVHRDLKTSNILLDEEMNPKITDFGIAKLFDANQTDGMTKTVVGTFGYMAPEYIRHGQFSVKSDVFSYGVIILEIVCGRKVIENRGGENIEDLLSIAWRNWKAGTTSDIVDPLLEQGFNKNEKLRSIHVGLLCVQEDIDVRPTMSSVLQMLSSTTYPLPEPSEPPFLMQPKRALSIALSGQYTGSTKSTDSGSGSQFTQGSTNISTPLDLETVFEHMLRR*	712

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g0532	711	Pfam	Protein kinase domain	372	640	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g0532	711	ProSiteProfiles	Gnk2-homologous domain profile.	29	132	IPR002902	-
	Tpr1g0532	711	Gene3D	Transferase(Phosphotransferase) domain 1	447	648	-	-
	Tpr1g0532	711	SUPERFAMILY	Protein kinase-like (PK-like)	356	670	IPR011009	-
	Tpr1g0532	711	Pfam	Salt stress response/antifungal	34	129	IPR002902	-
	Tpr1g0532	711	Pfam	Salt stress response/antifungal	153	245	IPR002902	-
	Tpr1g0532	711	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	10	671	-	-
	Tpr1g0532	711	SMART	serkin_6	371	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g0532	711	ProSiteProfiles	Protein kinase domain profile.	371	658	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g0532	711	Coils	Coil	164	184	-	-
	Tpr1g0532	711	CDD	STKc_IRAK	377	642	-	-
	Tpr1g0532	711	ProSiteProfiles	Gnk2-homologous domain profile.	137	249	IPR002902	-
	Tpr1g0532	711	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	492	504	IPR008271	GO:0004672\|GO:0006468
	Tpr1g0532	711	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	10	671	-	-
	Tpr1g0532	711	Gene3D	Phosphorylase Kinase; domain 1	334	446	-	-
	Tpr1g0532	711	ProSitePatterns	Protein kinases ATP-binding region signature.	377	399	IPR017441	GO:0005524
	Tpr1g0532	711	Gene3D	-	26	131	IPR038408	-
	Tpr1g0532	711	Gene3D	-	140	249	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g0532	Tpr-Chr1	4466805	4472960	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g0532	37	660	Receptor kinase-like Gene Family	AT4G21410	44.984	1.85e-179	526

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tpr1g0532		Pkinase	1.1e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g0532	-		-	gmx:100787936	702.59