LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g0529	ATGCTTTTCTTGAAACATAGCTTTCTCTTCCTCTTTCTGTTTGGATGTCTTGCCTCATCATCATCAGCATCTCCAAATTACAATGATATTTACTGTCCAAACAACAAAACCTATGAATCCAACAACACAATATTCAATACAAATCTCAATGTCCTCCTCTCCACTATGGTCACCAACGCCACCCAAGGCGCTGATACCTACTCTCCCATCATGGGTTTCGGAACCAGCAACGCCGTCAATGGTGCTTTCCTCTGCCGCGGAGATGTTAACTCCACTACATGTATGGATTGTGTAACCACTGCAGCCACGGATATAACACGCCGTTGTCCCAACCAAACAGAGTCAATTATATGGTACGATGAATGCATGGTGCGTTATACTAACCGTTACTTTGCTCCCACCAGTATTGTCCCAAGAGCGAATATAAACAACGGCAAAAACATCTCTACCTCGAAAGTGGATGTCTTTAATCAAATGTTGTTAGGTTTCTTGGGAGGTTTGGCTGGAGAAGCTGGAAATTCTCAGACATCGAAGATGTTTGCGACCGGTGAAGCAAACTTCAATTTAAGCGGTGGTACGAATAAGGTGATTACGGTTTATGGGTTGGCGCAGTGTGTGCCCGGTGTGACGAATGTTCAGTGTCAGGATTGTTTGGTAAATGCATCAAGAACTCTTTTGACGTGTTGTGAAGGAAAACAAGGTGCAAGAGCCTTGCTTGCGTGGTGTAATATCAGATATGATTTGCAACGGTTTTACAATATAACCGATGAATCAGCTTCAACACCGGGTTCTCCTTCAGGAAAGAACAAGTCCAAGTCAAAAACAAGGGCCGTCTTGATTGTTGTTCTTGTCACCGGGTCAACAATTCTGTTTTGTTTGGGCTGCTATTTTGTCATGAGAAGATCAAGCTGGAGGAAATATAAAACTCTTATGAGAGAAAATTTTGGTAATGAAAGTTCCACGTTAGAATCACTACAATATAATTTGGCGACCATTGAAGCAGCCACAAAGAAATTTTCACCTGAGAATAAAATAGGCAAGGGAGGATTTGGAGAAGTTTACAAGGGTATTCTTGTAGATGGAAGGGAAATAGCTGTAAAGAAGCTATCTCAAACTTCAGGACAAGGTGCAGCAGAGTTCAAAAATGAGGTTTTACTAATAGCCAAACTTCAACATAGAAATTTGGTGACCTTAATAGGTTTTTGCTTGAAAGAGCAAGAGAAAATGCTGATTTATGAATACGTGTCCAACAAAAGTCTCGATTACTTTTTATTTGATCGCAACAAGTCCAGACTATTACACTGGTTTGAACGATACAAAATCATAGAAGGAATTGCACATGGAATACATTATCTGCATGATCATTCAAGATTGAAAATTATTCATCGTGATCTCAAACCTAGCAATGTATTGTTAGATGATAATATGAATCCTAAAATATCTGATTTTGGCATGGCAAGAATGGTGGCTCTAGATCAAGATCGAGGAAGTACAAATAGAATTGTTGGAACATATGGCTATATGTCTCAGGAATATGCAATGCATGGCCAATTTTCAGAAAAATCAGATGTCTTCAGTTTTGGAGTCATAATTTTGGAGATAATTAGTTCAAAAAAGAATGCTCGTTCTCTTTTATCAAATAACACTGATGACCTCTTGAGTCGTGCTTGGAGACAATGGAGGGATCAAACACCATTAGAACTAATAGACAAAGATATAAAAGAATCATGCAATCCTAAAGAAGCCATTAAATGCATTCAAATTGGTTTATTATGTGTTCAAGAAAAACCTGATGATAGACCTTCAATGGCAAATGTTGTTTCGTATCTCACTAGCCCATCAGCTGAGTTGCCGATTCCTGGAGAACCAACTAAGCCTATGCATAGTGGATTACTGCAAACAGCGGTAGCAGGGGAACTGAGTTCAACTTCTACATCAACAGTCAATGAAATGTCTTCATCAGTTGTACCAAGTTCTACATTCTAG	1986	0.3933	MLFLKHSFLFLFLFGCLASSSSASPNYNDIYCPNNKTYESNNTIFNTNLNVLLSTMVTNATQGADTYSPIMGFGTSNAVNGAFLCRGDVNSTTCMDCVTTAATDITRRCPNQTESIIWYDECMVRYTNRYFAPTSIVPRANINNGKNISTSKVDVFNQMLLGFLGGLAGEAGNSQTSKMFATGEANFNLSGGTNKVITVYGLAQCVPGVTNVQCQDCLVNASRTLLTCCEGKQGARALLAWCNIRYDLQRFYNITDESASTPGSPSGKNKSKSKTRAVLIVVLVTGSTILFCLGCYFVMRRSSWRKYKTLMRENFGNESSTLESLQYNLATIEAATKKFSPENKIGKGGFGEVYKGILVDGREIAVKKLSQTSGQGAAEFKNEVLLIAKLQHRNLVTLIGFCLKEQEKMLIYEYVSNKSLDYFLFDRNKSRLLHWFERYKIIEGIAHGIHYLHDHSRLKIIHRDLKPSNVLLDDNMNPKISDFGMARMVALDQDRGSTNRIVGTYGYMSQEYAMHGQFSEKSDVFSFGVIILEIISSKKNARSLLSNNTDDLLSRAWRQWRDQTPLELIDKDIKESCNPKEAIKCIQIGLLCVQEKPDDRPSMANVVSYLTSPSAELPIPGEPTKPMHSGLLQTAVAGELSSTSTSTVNEMSSSVVPSSTF*	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g0529	661	Gene3D	Transferase(Phosphotransferase) domain 1	415	617	-	-
	Tpr1g0529	661	Pfam	Salt stress response/antifungal	32	128	IPR002902	-
	Tpr1g0529	661	Pfam	Salt stress response/antifungal	152	247	IPR002902	-
	Tpr1g0529	661	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	7	659	-	-
	Tpr1g0529	661	Pfam	Protein tyrosine and serine/threonine kinase	342	610	IPR001245	GO:0004672\|GO:0006468
	Tpr1g0529	661	ProSiteProfiles	Gnk2-homologous domain profile.	136	251	IPR002902	-
	Tpr1g0529	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	460	472	IPR008271	GO:0004672\|GO:0006468
	Tpr1g0529	661	Gene3D	-	26	131	IPR038408	-
	Tpr1g0529	661	Gene3D	-	139	251	IPR038408	-
	Tpr1g0529	661	SUPERFAMILY	Protein kinase-like (PK-like)	323	627	IPR011009	-
	Tpr1g0529	661	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	16	-	-
	Tpr1g0529	661	ProSiteProfiles	Gnk2-homologous domain profile.	26	131	IPR002902	-
	Tpr1g0529	661	SMART	serkin_6	339	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g0529	661	ProSiteProfiles	Protein kinase domain profile.	339	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr1g0529	661	Gene3D	Phosphorylase Kinase; domain 1	301	414	-	-
	Tpr1g0529	661	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	7	659	-	-
	Tpr1g0529	661	CDD	STKc_IRAK	345	611	-	-
	Tpr1g0529	661	ProSitePatterns	Protein kinases ATP-binding region signature.	345	368	IPR017441	GO:0005524
	Tpr1g0529	661	MobiDBLite	consensus disorder prediction	642	661	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g0529	Tpr-Chr1	4455721	4459233	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g0529	7	620	Receptor kinase-like Gene Family	AT4G05200	45.397	0.0	529

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tpr1g0529		PK_Tyr_Ser-Thr	3.8e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g0529	-		-	ccaj:109813299	917.146